Xruf033623.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014499.1:11324180-11334096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.39 31 6.8 2.3 2 23 164 185 163 185 0.95 2 15 2.1e-05 0.0017 20.2 5.5 1 23 190 212 190 212 0.99 3 15 0.00075 0.06 15.4 5.5 1 23 218 240 218 240 0.97 4 15 0.00022 0.017 17.0 0.8 1 21 246 266 246 266 0.97 5 15 1.1e-05 0.00085 21.2 0.4 1 23 274 296 274 296 0.97 6 15 0.17 13 8.0 4.8 1 20 520 539 520 540 0.94 7 15 5.5e-06 0.00044 22.1 6.0 1 23 547 569 547 569 0.98 8 15 6e-06 0.00048 21.9 3.5 1 23 575 597 575 597 0.97 9 15 2.1e-05 0.0017 20.2 0.4 1 23 603 626 603 626 0.95 10 15 0.0022 0.18 13.9 1.0 1 23 638 660 638 660 0.98 11 15 0.012 0.98 11.5 5.3 1 23 666 688 666 688 0.97 12 15 4.6e-06 0.00037 22.3 0.5 1 23 695 717 695 717 0.96 13 15 5.9e-06 0.00047 22.0 1.2 1 23 723 745 723 745 0.98 14 15 8.7e-07 7e-05 24.6 0.9 3 23 753 773 751 773 0.96 15 15 4.3e-05 0.0034 19.3 0.1 1 23 779 801 779 801 0.99
Sequence Information
- Coding Sequence
- ATGGTTGAGTTGGAGTGCGATTTTAGTCGCATCTGCCGTTCGTGCATGTGCGAAGATGCCATAATGCAGCCAGTGTTTGATGAAATACGCGAAGAAAACGGCGATGCCCGAATTGACGAGATGCTAATGGCTTGTACTTCCGTGCAGATAAAAGCTGAAGACGGTCTACCAAATTTGATATGTTTGGTGTGTGCTGAGCAGTTAAAGAGCTCTTACATTTTTAAAATGAAGTTTGAATTGTGTGATAAGAATTTAAgagaaatattaaataaaaagatGCACAGTGTCAAACAAGAATCAGTTCATCTAAATGCAGAAACTGAAAACAATAGTTGCGAACTCATGGTCTCCCATGTAAGTACTGAAGATTCCGATAATACCGAGAGCCAAAACGAGGCTAAATATGAGCCAGAGCCCGGTGAAATTCAACCAAAAGAGTCCGACAAGTGTGATTTTATCGAGTTCCTTGATAATAATAGGCAATTGCTTACTTGCCGAGTATGTTACAAAGTTTTTACAAGTGTGGAAGGCTTAAGATGCCACAAGCGCCTTCACGTAGGCGGTATGTTTAAGTGCAAGTTCTGCGACAAAGAATACACCCGTCAGAATCACTTGCAACGACATGAGATGACTCACGGAAAAAGGAAAGTGCACGTTTGTAAGATTTGCAAGAAAACTCTAACTCGATTCGAGCACCTAAAACGTCATTTGACGATTCACTTGAAAGAAAAACCATTTTCCTGCACTATTTGTAATAGGGGCTTTAACCGGCAAGAACACGTCATAAACCATATGAAATGTTGTAAAGGCGATCGCAGTTTTATTTGTGACATCTGCAATAAAGGTTTCAAGCGTGAAGATAGTCTCCAAGTTCATAGGAATTTACACGAAAATAAGAAACCTGTGTTGCCCACCATTGATAATTTGGATAACATCGAGGAACATTATTACCAAATCGACTACGATGGTGAATTTGAATTTTCTGATCCTTCTGACCATTCCGATGATGATATTGAAAATGATAATGACAACGATAATGGCAACGATAACGATGACATTGACATTGACAACAATGATAACAATGACAGCAATGACAACGAAAATGAGAATGAACTTGAAGGTTGTTTAGAACCTGAAATAGATATAACAGAGAATGATGTACTAGAGTCCAAAAAGACGGAAATTAATAATGAGGAACCAGATGAGAAATCTAGCGATGAAAGATCCGAACATATAGATACTGAGGTTGAGAAAGAAAATGAGAATCAGGTCGTAGAGAGTAATGAAGACTCAAAAGCACCATTGCTAAAGGAGGATCGAGCAATTTTAGATGATGATAACTATCTGCCCGAAGCCGATGATCCTGAGTCCTACAGCACAGACTCGGAATACTTGCCTACCAAACCTGCACCAAAGAAGAGAGGACGTGGTAGACCTCGCAAAAATCCTGTAGAACCAAATAAACCCAAGGGCAGACCGAGAGGACGCCCACCAGTTAAAGTCAAAACTGAGCCTCTTGAACCTGATGAACACAAACCAGATGAGCCTCTTCCAGAATTCAACTGTTTGTATTGTGACAAAGTGTTCCACAAAACTGCTACTTTAAAGAATCATAAGTGCCCTAATAGACCTCGAGAACACAAATGCGAAGTTTGTAGCAAAGTTTTCTCGCGTTCGAATCATTTGAAACGACACATGACTTCGCACAGTGAGAAGAAGTCATTCTTTTGCGATATATGCACGAAAGCGTTTAATAGACGCGATCATTTAACGCAACACATGAAGTTGCATTCTAGGGCCCAGGAGTTTGAGTGCGATATTTGTAAACGCCCGTTCACCAGGGCCGACCAACTGGCCAAACACAAGGCGTCGAAACACAATCAGGGTGAAAAAATTGTGGGTGAAAAGAAGTACAAGTGTACTGTGTGTGAAAAAGGGTTCACCACGGAGAAGTATAGAGATATACATATGAAGGGCCATGTAGGAGAAAAAAGGTTCAGATGTAAGACttgcaataaattgtttttgtccAAGTCTCACCTCACGGAACACATCAAATTCCATAATGATaattcgaagaaatttttgtgctCCGAGTGTGGACAAAGGTTTATAAGGAATGATTACTTGGTTATTCACATGAGGAGACATCGGGGAGAGAAACCTTTTAAGTGTAAATATTGTGGAAAAGGTTTTCCTCGCACTACCGATTTAACTGTTCATGAACGTTATCATACGGGTGAAAAGACTCATTTGTGTACCATTTGTGGTCGTGGTTTTGGGagAGCGTACAACTTGACAGTCCATATGAGAACCCATACGGGAGAAAAACCATACCAATGCACTTATTGCGATGCAGCTTTTGCTCAGGGGAATGACCTAAAAGCGCACGTGCGCAGGCACACCGGTGAGAGATTCCAGTGTGAATTGTGTTCAGATACTTTCCTTATGGGGTATTTGCTTACTCAACACAAACGTGCTGCCCACGGGTTGAATGTTGTGAGTAATATTCGAAGACTGCAGCCCGTTCGTAAATTCGAGGATAATCCGGATGATCCGCCACCAATCACAATTCCTTTGCCGATTCCAGTGATACCTTCTACTTATATGGCACAGATTGCTGCGGCCCATATGCAACAGCAAGCTATGGAAGACATGTAG
- Protein Sequence
- MVELECDFSRICRSCMCEDAIMQPVFDEIREENGDARIDEMLMACTSVQIKAEDGLPNLICLVCAEQLKSSYIFKMKFELCDKNLREILNKKMHSVKQESVHLNAETENNSCELMVSHVSTEDSDNTESQNEAKYEPEPGEIQPKESDKCDFIEFLDNNRQLLTCRVCYKVFTSVEGLRCHKRLHVGGMFKCKFCDKEYTRQNHLQRHEMTHGKRKVHVCKICKKTLTRFEHLKRHLTIHLKEKPFSCTICNRGFNRQEHVINHMKCCKGDRSFICDICNKGFKREDSLQVHRNLHENKKPVLPTIDNLDNIEEHYYQIDYDGEFEFSDPSDHSDDDIENDNDNDNGNDNDDIDIDNNDNNDSNDNENENELEGCLEPEIDITENDVLESKKTEINNEEPDEKSSDERSEHIDTEVEKENENQVVESNEDSKAPLLKEDRAILDDDNYLPEADDPESYSTDSEYLPTKPAPKKRGRGRPRKNPVEPNKPKGRPRGRPPVKVKTEPLEPDEHKPDEPLPEFNCLYCDKVFHKTATLKNHKCPNRPREHKCEVCSKVFSRSNHLKRHMTSHSEKKSFFCDICTKAFNRRDHLTQHMKLHSRAQEFECDICKRPFTRADQLAKHKASKHNQGEKIVGEKKYKCTVCEKGFTTEKYRDIHMKGHVGEKRFRCKTCNKLFLSKSHLTEHIKFHNDNSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCSDTFLMGYLLTQHKRAAHGLNVVSNIRRLQPVRKFEDNPDDPPPITIPLPIPVIPSTYMAQIAAAHMQQQAMEDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -