Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014492.1:34316626-34320843[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.054 4.4 9.5 0.1 1 23 152 174 152 174 0.97

2 12 1.3e-05 0.0011 20.9 1.8 2 23 184 205 183 205 0.97

3 12 9.8e-07 7.9e-05 24.4 1.0 1 23 211 233 211 233 0.99

4 12 0.0025 0.2 13.7 0.3 3 23 241 261 239 261 0.96

5 12 1.3e-05 0.0011 20.9 0.4 2 23 268 289 267 289 0.97

6 12 3e-05 0.0024 19.7 2.4 1 23 295 317 295 317 0.96

7 12 4.1e-05 0.0033 19.3 1.5 1 23 323 345 323 345 0.95

8 12 2.2e-07 1.8e-05 26.5 0.6 1 23 351 373 351 373 0.97

9 12 3.1e-06 0.00025 22.8 0.4 1 23 379 401 379 401 0.98

10 12 3.4e-07 2.7e-05 25.9 0.9 1 23 407 429 407 429 0.99

11 12 5.8e-06 0.00047 22.0 0.6 1 23 435 457 435 457 0.97

12 12 1.4e-05 0.0011 20.8 0.6 1 23 463 485 463 485 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.054	4.4	9.5	0.1	1	23	152	174	152	174	0.97
2	12	1.3e-05	0.0011	20.9	1.8	2	23	184	205	183	205	0.97
3	12	9.8e-07	7.9e-05	24.4	1.0	1	23	211	233	211	233	0.99
4	12	0.0025	0.2	13.7	0.3	3	23	241	261	239	261	0.96
5	12	1.3e-05	0.0011	20.9	0.4	2	23	268	289	267	289	0.97
6	12	3e-05	0.0024	19.7	2.4	1	23	295	317	295	317	0.96
7	12	4.1e-05	0.0033	19.3	1.5	1	23	323	345	323	345	0.95
8	12	2.2e-07	1.8e-05	26.5	0.6	1	23	351	373	351	373	0.97
9	12	3.1e-06	0.00025	22.8	0.4	1	23	379	401	379	401	0.98
10	12	3.4e-07	2.7e-05	25.9	0.9	1	23	407	429	407	429	0.99
11	12	5.8e-06	0.00047	22.0	0.6	1	23	435	457	435	457	0.97
12	12	1.4e-05	0.0011	20.8	0.6	1	23	463	485	463	485	0.98

Sequence Information

Coding Sequence: ATGGATGAAAGTTTAACAAATCATTCAAGAATTTGCAGAGCATGCTTGTCAGAAGACCAAAACATGGAATCTTTATTAGAGAGTCCTGTAGGAGAAATGTATATTTCATGTACTTCTTTATCGaTTCCAAGTGATGACAAGTTAACCACGTTTATCTGTAATAATTGCAAATCTGAATTGTTGCGGGCCTATTCATTTAAGCAATTATGTGTAAAATCATATAACGCTTTGAAAAATACGGTTTCATATAAATTGGAAGATATAGATTTTAGTTTCATAGAATTTCTTAAAAGTGATACTTTTGAAGATAGTGTTAAAGATAATGATACTATAAAAGACAGTGTAGATAATGAGACTATAGAAAGTATAATAGACAATGGAACTGAAAACGACAAAGTAGGAGTCAAAGCCGAAAAGAAATCAGAgaaacataaaattaaagatcATTTCACTTTTAAATGTGAAATGTGTTCAGATGGCTTTAATTTAGAGGGCGATTTACAAATACACATGACGGCACACCCAACAAATGGCCAAACCAAAAATATCACTTGTACCATTtgcaataaacaatttaaaaatttgaaagtTTTGAAACGTCACGTGAGGACCCATATGACGTGTAAACCATTTCAATGTGAAGTATGCAAAAAAGGTTTTTCGGAATCGGGGAGCTTAACACGCCATTTGAGAAAACATCGCGGAGAGAAGCGACATTTATGTACTGTCTGTGGAAAAGGGTTTTACGAGGGAAATGTTTTAGCTGTGCACATGCGAAcacacacaggcgaaaagcctaTCGAATGTCAAGTTTGTAGCAGGAGATTTTCTGATCCGAATGGACTAAGAAGTCACATGAAGTCACATACTGGAGAGAAGAAATATTTGTGTAGTGTTTGTAATAAAGCATTTTCTCATTCGTTTGTTTTAAAGAAACATTTGAGGGTGCATAGTGGAGAGAGACCATACTTGTGTTCCGTTTGTGGAAAGTCATTTACTCAGAGTCATTATGTGTCTATACACATGTTACAGCATACAGGGGAACTCCCTTTCGCCTGTAAGGTTTGTCAAAAAGGATTCACTCAAAATAGTCAACTCGAAATGCACATGAGAGTTCATACAGGATTAAAACCTTATATTTGTGCTGTTTGTGGGAAAAGATGTGCACGTTCTGGAGACTTGGCAACCCATATGAGATCTCACACTGGTGAAAAGCCCTATGTATGCAGCATCTGCCCTAAACGATATGTCACATCAAGCCATTTAGGCGTTCATATGCGCACTCACAGTGGTGAACGATCTCACATTTGCAGTCTGTGCGGAAAAGCATTTACTGAAGCACAAACTTTAAAAGCTCATGTTAGAACACATACAGGAGAGAAACCTTATATTTGTAGTGTTTGTGGTCATCGGTTTGCACAATCTGGAGCTTTGGCTACTCACAGAAAAACACATAGTAATAATAAAAGTGAAGTGAAAGCTTTGTAG
Protein Sequence: MDESLTNHSRICRACLSEDQNMESLLESPVGEMYISCTSLSIPSDDKLTTFICNNCKSELLRAYSFKQLCVKSYNALKNTVSYKLEDIDFSFIEFLKSDTFEDSVKDNDTIKDSVDNETIESIIDNGTENDKVGVKAEKKSEKHKIKDHFTFKCEMCSDGFNLEGDLQIHMTAHPTNGQTKNITCTICNKQFKNLKVLKRHVRTHMTCKPFQCEVCKKGFSESGSLTRHLRKHRGEKRHLCTVCGKGFYEGNVLAVHMRTHTGEKPIECQVCSRRFSDPNGLRSHMKSHTGEKKYLCSVCNKAFSHSFVLKKHLRVHSGERPYLCSVCGKSFTQSHYVSIHMLQHTGELPFACKVCQKGFTQNSQLEMHMRVHTGLKPYICAVCGKRCARSGDLATHMRSHTGEKPYVCSICPKRYVTSSHLGVHMRTHSGERSHICSLCGKAFTEAQTLKAHVRTHTGEKPYICSVCGHRFAQSGALATHRKTHSNNKSEVKAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -