Xruf009848.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43610618-43615008[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.52 42 6.4 4.2 1 23 33 56 33 56 0.96 2 22 0.0016 0.13 14.3 1.1 1 23 91 114 91 114 0.95 3 22 0.024 1.9 10.6 1.5 1 23 119 141 119 141 0.96 4 22 4.5e-05 0.0036 19.2 1.5 1 23 146 168 146 168 0.99 5 22 0.059 4.8 9.4 1.5 2 19 176 193 176 198 0.83 6 22 0.065 5.3 9.2 1.0 1 23 207 229 207 229 0.97 7 22 0.068 5.5 9.2 0.0 1 23 235 257 235 257 0.93 8 22 1.2e-06 0.0001 24.1 1.8 1 23 263 286 263 286 0.97 9 22 4.8e-06 0.00039 22.3 1.7 1 23 292 315 292 315 0.97 10 22 0.028 2.3 10.4 2.0 2 23 375 397 375 397 0.92 11 22 0.04 3.3 9.9 0.2 2 23 433 455 432 455 0.92 12 22 0.0022 0.18 13.9 1.0 1 23 460 483 460 483 0.96 13 22 0.0094 0.76 11.9 2.6 1 23 488 507 488 507 0.97 14 22 0.07 5.7 9.1 2.5 1 19 517 535 517 540 0.93 15 22 0.021 1.7 10.8 0.3 1 23 547 569 547 569 0.97 16 22 0.072 5.8 9.1 0.0 1 23 575 597 575 597 0.92 17 22 5e-07 4e-05 25.3 0.7 1 23 603 626 603 626 0.98 18 22 0.00015 0.012 17.5 1.1 1 23 632 655 632 655 0.96 19 22 0.00075 0.061 15.3 0.9 1 23 682 704 682 704 0.98 20 22 0.0025 0.2 13.7 0.1 2 23 711 732 710 732 0.92 21 22 0.0001 0.0084 18.0 0.4 1 23 737 760 737 760 0.97 22 22 4.1e-05 0.0033 19.3 1.5 1 23 766 789 766 789 0.97
Sequence Information
- Coding Sequence
- ATGAAGCCACCAAGGGTACGGAAACGCCATTACGTTGCTTCTTCAAAAGTTCATGTAGATGCTGAGGATCAGCTTAAATCCGACATAACTTATACTTTCAGTTGCCGTAAATGTAAAATCTCATTTCCATCAAAGATTGATCACACGAGGCATTTCAGAAAAGTGCACGAAGTTAAAAGATACCCTTGTGCTGTTTGTAACAAGAGAGGTTTTCTTAGTTTAGAGGAGCTCCATAAGCACAAGAAGGAGGAGCATAAGAACGTCAGGGTGTTCAAGTGCGATTTTTGCGATAACAGATACACTTCGAAGCAGGCTTTGAACAACCACAGGATGGGGGTTCACTTGGACCCGAGACATAAGTGCGAGCAATGCGGTAAAGTACTCCTCACGAAGAAAAGTCTTAAAGATCATGAAAGCATACATACCGGTGTTACTTACAAGTGCGAGATCTGCGAGAAAGTGTTTAAAAATCTTGGATACTATCAGATGCATTCAAAAACCCATCAGCCGAATTACTCTGGGGCGACATGTGAGATTTGCGATAAAACCTTTTCCAACCACGTGATGAAAAGGCTTCATGATAAAAAGGTTCATTCTGGCAATTTTCGGAAGAAAGAATTTATATGTGAAATGTGTGGTTTGAAAGTAGGCTCGACGTGCAGTTTGCGAGACCATAGATTGACCCACACCGGTGAGAGACCTTTCGTTTGCGACTTATGTGGTTCCGGATTCATAAATGCAGAGCGTCTTAGGATTCATTCTGTGGTTCATACCAAAATAAAGAGGTTTTCTTGCACTTATTGTGGTAAATCGTACACTCAAAGGCAGACCCTCAAATTGCACATACGATCGGTTCATAACAAAGAAAGACCATTTGAGTGTACCATTTGCAAGAAAAGGTTTATAACTAGTAGCTTGTTAAAAAGCCATATCAGTAAGACACATGGCGAGGCCTTGGCGGATATTGGTAAACGTAAAGACGACAAAGGATATAATATTAAACTTGAGAAattGGAGTTAGTCGCAGCAGAATTGATGCCACCTCAATTCGAAGAAGTTATTTTACTAATAGATACGAATGACCAATGTACACTTGACGATAATCGGCCAATTCGTATTCGTACTTGCCACCTATGCAATATTACATTCATCAGCGACTATGATTATCGCAGGCATCATGAGGCAGTCCACCGAATGAAGAGATACACTTGTCATGTGTGTAATAGAGGCGGTATTCTTACTTTAGAGGATCTACAGAAGCACGGAAAAGAAGAACATGGCGATACTAGGGTGCTTAAATGTGATTTTTGTGATAAAATATATGCTTCTACTAAATCCAAGAACGCACACATGGCAGCAGTTCACTTGGAACCGAAATTTGAATGTACGGAGTGTGGTAAACGTCATATTTCAGAGAGTACCCTACAGAATCATATTACGAGGGCTCATAAAAGTGTTGGTTATCAGTGTGATGTCTGCGGAAAGGTTTGTAAATCGTTGGAAACTCACATGAAAACTCATGACCCAAGTTACTCTGACGCTACAGTCCACAAGTGCCAGATATGCAATGTAACCTTTGCcaataaaactaataaaagAGTTCATGACACAAGGTTTCATTTAGGCGAAAAGAAAGAATTTATTTGCGAAATTTGCGGTTCCAAGTTGCGTTCTACTGTCAGCTTACGCAACCACAAACTAATCCACACCGGAGAGAAACCGTTTGTGTGTGACGTATGCGGTGCCAGATTTTCAATTGTCGAGGGTCTTAAGGTGCACTCTGTAGTCCATACAAAAATAAAGCGATATACTTGTAGCATATGTAACAAATCGTACACTCAAAAAGTTTCGCTTAATGTGCACATAAGGTCGGTTCATAGGCGAGAGAGACCATTTGAATGCAATGTCTGCAATAGAAGATTTGTTACCAGAACATTGTTGAGAGTGCACAATAATAAGGAACACGGGCAAGCTTTGGCAGATATCGGCAAAAGCAATGAAGATAATAAGAGGATTGGCGGCAATCCTCGCCCCAAGAAAGAATTCACCTGCGACATTTGCAATTTGAAAATAACTACTTCCTACGCTTTGCGGAACCACAAATTAACTCACTCGGGGGAAAAACCCTTAGTATGTGACGTGTGTGGTAGGAGATTCAGAGACGCCCTGGGTCTCAAGACGCATTCTGTGGTCCACACAAAAGTCAAATTTCCTTGTACCTTATGCGACAAATCATACACTCAGAGGATTACGCTTTCTTTGCACGTGCGATCGGTGCATAAAAAAGAGAGACCGTTCGAGTGCAGTATTTGCAAGAAAAAGTTTGTGACTAGTACGCTGTTGAAGATACACAACAGAAAGGTACATAGGAAAGACTTGGGAGATATCAGTAAACGCAAAGATAACGAAGAAGTCGCAACGTAG
- Protein Sequence
- MKPPRVRKRHYVASSKVHVDAEDQLKSDITYTFSCRKCKISFPSKIDHTRHFRKVHEVKRYPCAVCNKRGFLSLEELHKHKKEEHKNVRVFKCDFCDNRYTSKQALNNHRMGVHLDPRHKCEQCGKVLLTKKSLKDHESIHTGVTYKCEICEKVFKNLGYYQMHSKTHQPNYSGATCEICDKTFSNHVMKRLHDKKVHSGNFRKKEFICEMCGLKVGSTCSLRDHRLTHTGERPFVCDLCGSGFINAERLRIHSVVHTKIKRFSCTYCGKSYTQRQTLKLHIRSVHNKERPFECTICKKRFITSSLLKSHISKTHGEALADIGKRKDDKGYNIKLEKLELVAAELMPPQFEEVILLIDTNDQCTLDDNRPIRIRTCHLCNITFISDYDYRRHHEAVHRMKRYTCHVCNRGGILTLEDLQKHGKEEHGDTRVLKCDFCDKIYASTKSKNAHMAAVHLEPKFECTECGKRHISESTLQNHITRAHKSVGYQCDVCGKVCKSLETHMKTHDPSYSDATVHKCQICNVTFANKTNKRVHDTRFHLGEKKEFICEICGSKLRSTVSLRNHKLIHTGEKPFVCDVCGARFSIVEGLKVHSVVHTKIKRYTCSICNKSYTQKVSLNVHIRSVHRRERPFECNVCNRRFVTRTLLRVHNNKEHGQALADIGKSNEDNKRIGGNPRPKKEFTCDICNLKITTSYALRNHKLTHSGEKPLVCDVCGRRFRDALGLKTHSVVHTKVKFPCTLCDKSYTQRITLSLHVRSVHKKERPFECSICKKKFVTSTLLKIHNRKVHRKDLGDISKRKDNEEVAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -