Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014497.1:22297878-22299395[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2e-07 1.6e-05 26.6 0.6 1 23 10 32 10 32 0.99

2 14 1.6e-06 0.00013 23.8 1.0 1 23 38 60 38 60 0.98

3 14 3e-06 0.00024 22.9 1.0 1 23 67 89 67 89 0.98

4 14 8.4e-06 0.00068 21.5 0.7 1 23 95 117 95 117 0.96

5 14 1.2e-05 0.00099 21.0 0.1 1 23 133 155 133 155 0.99

6 14 0.008 0.64 12.1 0.3 1 23 162 184 162 184 0.96

7 14 0.0016 0.13 14.4 0.2 1 23 190 212 190 212 0.99

8 14 1.3e-05 0.001 20.9 1.8 1 23 218 240 218 240 0.99

9 14 0.024 1.9 10.6 0.7 3 20 246 265 245 267 0.90

10 14 1.9e-05 0.0016 20.4 0.1 1 23 274 296 274 296 0.99

11 14 1.6e-06 0.00013 23.8 1.6 1 23 302 324 302 324 0.98

12 14 2.6e-06 0.00021 23.1 0.3 1 23 330 352 330 352 0.99

13 14 0.00046 0.037 16.0 3.8 1 23 362 384 362 384 0.96

14 14 0.0008 0.065 15.3 1.9 1 23 390 412 390 412 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2e-07	1.6e-05	26.6	0.6	1	23	10	32	10	32	0.99
2	14	1.6e-06	0.00013	23.8	1.0	1	23	38	60	38	60	0.98
3	14	3e-06	0.00024	22.9	1.0	1	23	67	89	67	89	0.98
4	14	8.4e-06	0.00068	21.5	0.7	1	23	95	117	95	117	0.96
5	14	1.2e-05	0.00099	21.0	0.1	1	23	133	155	133	155	0.99
6	14	0.008	0.64	12.1	0.3	1	23	162	184	162	184	0.96
7	14	0.0016	0.13	14.4	0.2	1	23	190	212	190	212	0.99
8	14	1.3e-05	0.001	20.9	1.8	1	23	218	240	218	240	0.99
9	14	0.024	1.9	10.6	0.7	3	20	246	265	245	267	0.90
10	14	1.9e-05	0.0016	20.4	0.1	1	23	274	296	274	296	0.99
11	14	1.6e-06	0.00013	23.8	1.6	1	23	302	324	302	324	0.98
12	14	2.6e-06	0.00021	23.1	0.3	1	23	330	352	330	352	0.99
13	14	0.00046	0.037	16.0	3.8	1	23	362	384	362	384	0.96
14	14	0.0008	0.065	15.3	1.9	1	23	390	412	390	412	0.97

Sequence Information

Coding Sequence: ATGGGACCCACCAAAGTAGCTACTCCATACAAATGTGACATTTGTCAAAAAAGATTCTCTAGCCCTTCCAAACTAACGGGGCACATTAGGATACATACGGGAGAAAAACCTTACAAGTGTGAGATTTGCAAGAAAACGTTTGCGCTGATATACAATTTAAGGAGGCACATGTCCATCCATACTGTACGAAAAAAGCCTTTCAGGTGCGAAGTGTGCGGTAGATGTTTCGTACAAAAATCCGTTCTTAGTGCTCACATGACGATCCATACTGGTGAGAAACCACATGTTTGTAAGATTTGCAACAAAGCCTTCTCGCGATTAGCAAGTTTAAAGATACACGCATTGTCGCATACCACCGAACCAACCCCAACCAACCAAGCTACCAAACTAACCCCATacgaatgtgaaatttgccaaaaagcgtTCGCCGCGCCTTTCACTTTAAAGAGACACGTCATGACACATACGATGCGAAAGAAACCTTACAAGTGTGACGTTTGCGAAAAAACATTCTTAGAACGTAGAACTTTAGTGAAACATGCTATCATTCACACGGAACAAAGGCCTTACAAGTGTGAGATTTGCGAGAATGCGTACCCGGAATTACGATATTTAAAGAGGCATGTTTTGACACACACGAAGGAGACATCGTACAAATGTAAAACTTGCCAAGAAACATTCTCTGACCGTTCCTCTATAGCGAAACATGTTAAAACTCACATGAAACAAAGACATTGCGAGGGAGAGATTTGCAAGAGAGCGTTCGATCATACACGCAATTTAAAAACGCACTTGTTGGGAGACGTGAAAGAAACACCATACAAATGTGTAATTTGCCAAAAGGCATTATCGGGGCAGTCCGCTTTAGCAAGACATGTTAGAACGCATACgggagaaaagcctcacaagtgtgaaatttgccaaaaagcattctctGAACGTTCCAAATTAAGGATACATATTAGGATTCACACGGGACAAAGACCTTACGAGTGCGAGATTTGCAAGAAAGCGTTCGGGCAGTTGACCAACTTAAAGGTCCATTTGTTGACGCACGACAAGGAAAAGCCCGTGGAAAAGCCACACAAGTGTGAATTTTGTAATAAATCTTTCATGCAAGTGTCTGGTTTAAAGAGACATTTGTTTAATCACACTGAAGAGAATCCCTTTTTCTGTGAAATCTGCAATATTTTATTTGCGACATATTATTCTTTGAGGAAGCATAGAAAGCAGCATGCAAATGGGGAAATCGTTGCGACAAGTGCCGAGGCAACACAAGATAAACGGTGTGATGAAAAGAGTGTTAGTGTGAAATTAGAAGAAAATATAACAGACGAAAAAGTagagtttgaaaattttgaaacgcTTCTCAAAATGGACAAGTGCGAGGTTAAGAATAAAAATGGTATTGGTGTAAAAGAAGAAGGGAATATTTTAGACGTAGAAGAGAATGCTGTAAAGTCTATgaaacttttcaaaaatgaaGACTATGAAGTTAAATATGAAGATAGTTCTTAA
Protein Sequence: MGPTKVATPYKCDICQKRFSSPSKLTGHIRIHTGEKPYKCEICKKTFALIYNLRRHMSIHTVRKKPFRCEVCGRCFVQKSVLSAHMTIHTGEKPHVCKICNKAFSRLASLKIHALSHTTEPTPTNQATKLTPYECEICQKAFAAPFTLKRHVMTHTMRKKPYKCDVCEKTFLERRTLVKHAIIHTEQRPYKCEICENAYPELRYLKRHVLTHTKETSYKCKTCQETFSDRSSIAKHVKTHMKQRHCEGEICKRAFDHTRNLKTHLLGDVKETPYKCVICQKALSGQSALARHVRTHTGEKPHKCEICQKAFSERSKLRIHIRIHTGQRPYECEICKKAFGQLTNLKVHLLTHDKEKPVEKPHKCEFCNKSFMQVSGLKRHLFNHTEENPFFCEICNILFATYYSLRKHRKQHANGEIVATSAEATQDKRCDEKSVSVKLEENITDEKVEFENFETLLKMDKCEVKNKNGIGVKEEGNILDVEENAVKSMKLFKNEDYEVKYEDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -