Xruf009835.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43563469-43570980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.4e-05 0.0011 20.8 2.3 1 23 18 40 18 40 0.98 2 21 0.34 27 7.0 0.4 6 23 54 71 52 71 0.73 3 21 0.00018 0.015 17.3 0.2 1 23 77 99 77 99 0.98 4 21 3.5e-05 0.0029 19.5 1.0 2 23 106 127 105 127 0.96 5 21 0.00018 0.014 17.3 0.9 1 23 139 161 139 161 0.98 6 21 0.00035 0.029 16.4 0.6 1 23 167 190 167 190 0.91 7 21 0.00028 0.023 16.7 0.2 3 23 198 219 196 219 0.96 8 21 1.8 1.5e+02 4.7 1.2 2 23 291 313 291 313 0.96 9 21 0.011 0.87 11.7 1.7 1 23 321 344 321 344 0.93 10 21 0.00021 0.017 17.1 0.7 1 23 348 371 348 371 0.96 11 21 0.00042 0.034 16.1 2.0 1 23 378 400 378 400 0.96 12 21 0.33 27 7.0 4.4 2 23 408 430 407 430 0.96 13 21 0.3 24 7.2 1.2 3 23 437 458 436 458 0.94 14 21 9.5e-05 0.0077 18.2 2.1 1 23 464 486 464 486 0.98 15 21 0.23 19 7.5 0.2 2 23 500 518 499 518 0.76 16 21 5.9e-05 0.0047 18.8 0.1 1 23 524 546 524 546 0.98 17 21 0.00026 0.021 16.8 0.9 2 23 553 574 552 574 0.96 18 21 5.2e-05 0.0041 19.0 1.9 1 23 586 608 586 608 0.97 19 21 2.5e-05 0.002 20.0 1.8 1 23 614 637 614 637 0.94 20 21 4.2e-05 0.0034 19.3 0.2 3 23 645 666 643 666 0.96 21 21 0.0051 0.41 12.7 1.2 1 23 672 695 672 695 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAATGTTTAAATCACAGACAAGAAGTCCACAGTTCTGGTAACCAATTCGAATGCAAACTTTGTGGTAAATTCTACGCGTCTAGACACACTTTAAAAGAACACATGGCTACTCATGATCCAGAGAAAGAAAAGTATGTCAGAAAAGTTACTGTCTGCGACATATGTGGAATAAAAACCTCGCAGCTGATCAATCATTTGAAAAAGCATTCGAACGACAAGCGGTTCGTTTGTGAACATTGTGGCCAGAGTTTCAAGCTCGCGATTGGTTTAGAGGTGCATCTAGAAAAACACTTATCGGAAAAAAACTTATCCTGTACGGACTGTGATAAGAAATTCGCTAGTCAGTCGGCGTTTAAGGTACATTCTATGAAGCACGAAGAAGAGAAGGCTACCGATGAAGACCGAAAGTATATGTGTTCTAGTTGTGGAAAACTGTTTGTCTACCGAAGTTCTCTCTCAGTGCACATGTACTCacataaaaaagaaagaaaGCATCCTTGCACAATGTGCGATAAAAAGTTCTTCAGCAATGGCTCTTTGAAAATACATGTAGAAGGAGTTCATCTAAAAGATATGAAATGGGCGTGCCAGTTTTGCGATAAGAAGTACACCCAAAACGCTTCATTGGCACTCCACCTTAAGATGATTCATTCGCAAGAGAGACCTTTTGAGTGTGTTATTTGCTGTAAGAGgGAACCAAAGCAACTAATAACAATTTTAGTACCCGTAAATAAACAAGATGCCTCGTCAAATTCAGAACAACTGTATATACCAATACAATTTATACCGACGAGAAAAGATTCACCGAGTGATGTTGAACCGGTGCTAGTTAGGAAGAAGAGATTATCGCCATTGGACCCAAGAAAGTGCGAAATTTGCCAGGCGTTACTTGGAAATTACAATACTTACAGAAAACACAAGAGGACATTTCATAAGACCGATAGAAAGAAGAGGTACCCTTGTAGAACTTGCAAGAAAACGTTTGAATCGAACGAGCTGCGACAGAAGCATAGAACTGAGGAGCACAACGAAACATACCAGTGCGATTACTGTGAAAGATTTTACACTAAAAAAGGATTGCTAGAGCAACATGTAATGAACGTCCACAACCAATCTGATTTAAAGTTTCAGTGTCACAAGTGCTGGAAAGCGTTTCCAACTGAAGAACGTTTGAAGAAACACGAAGAAAACCACGAAGAGCAAATTAAAATAACTAAATGTCTGAAATGCAACTTAAGTTTCCAGTCCGCAAAAGAATACTATAGTCACCACAAGAAGAGTCATCTGAAAAGGAAGGCACTGTGTTATATATGTTATAAGAGATTCCCGACACCAGAAGAATGTAGAAATCACAGGCAAGAAGTCCACAATTCCGGTAACCAATTCGAATGTGAGCTTTGCGGGAAATTCTACGCTTCTAGACATACTTTAAAAGGCCACATGTCCAGGCATGATCCTGACAAAGCAGGGACATTTTCTAGAAAAATTACGGTTTGTGACATATGCGGAAAAACAACCCCATATTTAGCCAATCACTTAAAAACCCATTCTACTGAGAAGCAGTATGTTTGTGAACACTGTGGTAAGGCATTCAAAGTCGCAATCGGTTTAGTCTTGCATCTAGAAACGCATATATCCGAGAAGAACGTATCGTGTACGGACTGCAAAAAGAAATTCGGTAGCGAGTCGGCACTTAAGGTACATTTCATGAAGCACAAAAAATCAAAGCCGGCCAGTAAAGATCAGAAGTTCATGTGCTCTGATTGTGGGAAACTGTTTACCTTTAAAAATTCCCTCACGATGCATATGTATTCGCATTCGAATGAAAGGAAGTACTCTTGCAAGATGTGCGATAAAAAGTTCTTCAGGAGCTCTACTTTGAGCAAACACGTGCAAGGAGTACATTTGAAACACAGAAAATGGGCCTGCACACTTTGCGATAAGCGGTATACCCAAAGCTCTTCGTTGGCACTCCATGTTAAGACGATCCATACGCATGAAAGACCCTTCGAGTGCGTTATTTGCAATGAGAAGTTCGTCGCGAACCATTTTCTGAAGAAACACAATAGGGTTGTCCATGGAGACGTTAAGGAAGAAAGTACAATCATAGAAATAGACTATTAA
- Protein Sequence
- MKECLNHRQEVHSSGNQFECKLCGKFYASRHTLKEHMATHDPEKEKYVRKVTVCDICGIKTSQLINHLKKHSNDKRFVCEHCGQSFKLAIGLEVHLEKHLSEKNLSCTDCDKKFASQSAFKVHSMKHEEEKATDEDRKYMCSSCGKLFVYRSSLSVHMYSHKKERKHPCTMCDKKFFSNGSLKIHVEGVHLKDMKWACQFCDKKYTQNASLALHLKMIHSQERPFECVICCKREPKQLITILVPVNKQDASSNSEQLYIPIQFIPTRKDSPSDVEPVLVRKKRLSPLDPRKCEICQALLGNYNTYRKHKRTFHKTDRKKRYPCRTCKKTFESNELRQKHRTEEHNETYQCDYCERFYTKKGLLEQHVMNVHNQSDLKFQCHKCWKAFPTEERLKKHEENHEEQIKITKCLKCNLSFQSAKEYYSHHKKSHLKRKALCYICYKRFPTPEECRNHRQEVHNSGNQFECELCGKFYASRHTLKGHMSRHDPDKAGTFSRKITVCDICGKTTPYLANHLKTHSTEKQYVCEHCGKAFKVAIGLVLHLETHISEKNVSCTDCKKKFGSESALKVHFMKHKKSKPASKDQKFMCSDCGKLFTFKNSLTMHMYSHSNERKYSCKMCDKKFFRSSTLSKHVQGVHLKHRKWACTLCDKRYTQSSSLALHVKTIHTHERPFECVICNEKFVANHFLKKHNRVVHGDVKEESTIIEIDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -