Xruf026473.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestobium rufovillosum
Gene Symbol
-
Assembly
GCA_963966045.2
Location
OZ014497.1:22609291-22616736[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0023 0.19 13.8 0.5 2 23 58 80 57 80 0.89
2 14 2.3e-07 1.8e-05 26.4 1.0 1 23 86 108 86 108 0.99
3 14 1.1e-07 8.7e-06 27.4 0.4 1 23 114 136 114 136 0.99
4 14 1.7e-05 0.0014 20.5 0.8 1 23 142 164 142 164 0.99
5 14 0.00038 0.031 16.3 2.6 2 23 171 192 170 192 0.96
6 14 8.5e-05 0.0068 18.3 1.9 1 23 198 220 198 220 0.97
7 14 2.5e-05 0.0021 20.0 3.0 1 23 226 248 226 248 0.99
8 14 3.7e-06 0.0003 22.6 4.4 1 23 254 276 254 276 0.97
9 14 2.6e-07 2.1e-05 26.2 1.6 2 23 283 304 282 304 0.97
10 14 1.8e-06 0.00014 23.6 1.4 1 23 310 332 310 332 0.98
11 14 2.4e-06 0.00019 23.2 4.4 1 23 343 365 343 365 0.99
12 14 1.6e-06 0.00013 23.8 0.5 1 23 371 393 371 393 0.99
13 14 4.1e-06 0.00033 22.5 0.4 1 23 399 421 399 421 0.98
14 14 0.0025 0.2 13.7 5.4 1 23 427 449 427 449 0.97

Sequence Information

Coding Sequence
ATGGACAGTGACTCGAAAATCGCAATAAAAGCCAGAAATACGGATgcacaatttttgataaaagatACTGCAACAGAAACGCCACTCGAGTACAAGATCGAGGCTGCACCGGAAAGTAACCCAATGATTTCGATAGAGCATATGTCGATACCCTCAAAGCCAACGCCCctcaaatgtgaaatttgccaaaagaCGTTCTCCGCGCTATACCTGCTAAGCAGACACAATGTCAGACTTCATATACCCGAAAAAGGCTTCAAGTGTACAGTGTGTAACAAACGTTTTGCTTCTAATAGCGATCTTAACATTCACGTACGAACTCACACGGGGGAGAGACCGTACGTTtgtgaaatttgcaagaaaGCGTTTGCGCGTTTAAGCACCTTGAACAGACACATGTTGACGCACACCAATGAAGCACCGTACAAGTGTCGGTTGTGTCCAAGAGCGTTCACTGAGCGCTACGGATTAAAGAAACACATTGAAACACACATAGCAGAAAACTCTTGCCAGTGTGAAACGTGTGGCAAATGGTTTACATCAAGCGTCAATCTTAGGAGACACTCGAAGGTTCACACTGGGAGAGAATCTCACATTTGCAATATTTGCAAGAAAGCGTTCTTGAGATCAGAAAATTTGAAGAGGCACGTACTGACTCACACCAAACAAACATCGTACGTATGTAAAATTTGCCGAAAAACATTCTGTGAGCGTACTGCTTTAAAGATACATGTCAGGACTCATACGGGAGAGAGGCCTCACGTAtgtgaaatttgcaagaaaACCTTCTCACAATCAGCGCATTTAAAGCAGCACTTATCGACGCATACGGGAGAGAAAAATTGCCGGTgtgaaatgtgcggcaaaggttTTACAACGCGTGGAGATCTTACGAGGCACATTAGGGTCCACTCGGGAGAGAAACCTCACGTTTGCAAGATTTGCAATAGAGCGTTCACGCAATTAGGAACTTTAAGGAGGCACATATTGACACACAGTGACCAAAAGAATGCTGATCAAACACAGTACAAATGTGAACTTTGCCAAAAAGCGTTCTCTAGGCACAGATCTTTAAGGAGACACGTCAGAACACACACGGGACAAAGACCGTACAAGTGTGAGATTTGCGAAAAAGCGTTCGGGCAGTTAAACACTTTAACGAGACACATGTTAACGCACACCAAAGAGAgaccttacaagtgtgaaatttgtgaTCGAGCATTCGCGCAAGCGTATTCATTAAAGATACACTTGTTTAAACACACCAATGAGAATCCGTTTTTCTGTAAGCTTTGCGATGTTTCCTTTAAGTCGGATACTCATTTGAAGAAGCATAAAATGAAGCACGGAAAAGAAGAGGTCATCGAGGAATCGCAGGATCAGAAGTCCGACGAAAATAGTGTTAGTGTGAAATTAGAAGACGATACAACGGGTGCAGAAAATGCAGTTGAAAAgACAAGAGGCACACTGAGAACAAGAGGAGGGCAGATCATTGCGTATGCCGATGATTTGGTTGTGATAACGAAGCAAAGAAAAATACTGGAGGGAATCCTAGAAGAAATAGAAGTGGAAGGAAGAAGAATTGGATTGGAAATAAACATTGACAAGACAAAGATAATGAGAATCGGCAGTCAAAAAACAACAGGAAGAATACGAATCGGTAGATACGAGGTTGAAGAAGTGAATAAGTTCAAGTATCTTGGAGTTACAATTACAAACAATGGAGAAAAACAGGAAGAGATTCGGGAAAAAATCCAGGCAGCAAATAGGACTTACTATGCAAATAAAAAGATACTGTGTAGCAAATCCATAAACACAAGTACAAAGATTAAAATGTATAGAACTATAATAAGACCCATACTAACATACGCTGCAGAAACCATGTCGTTTACTCAGAGAgagcaacaaatgttaaatgtaATGGAGAGAAAGATAATGAGGACAATATTGGAACCcgtaaaagttggagaaaatgaaataagaaggAGAATGAATCATGAAATAACGGAAAAATTGGATGGAGTGGATATAGTAACAAACATCAAATCCACACGGTTAGGATGGTTGGGGCATGTCTGGAGATCGGGAGCGGACAGCAAAATACGTGCGATAATGGAATGGAAACTGGGCAACAGAAGACGAAGAGGTAGACCAAAGAGTAGATGGTATGAAGAGGTCGAAGAGGATTTACGAAGGTTGGGAGTACGAAGATGGAAGGAAAAGGCAGAAAATAGAGGGGAATGGAAAAAGATCACGGAAGACATGAAAGGATGA
Protein Sequence
MDSDSKIAIKARNTDAQFLIKDTATETPLEYKIEAAPESNPMISIEHMSIPSKPTPLKCEICQKTFSALYLLSRHNVRLHIPEKGFKCTVCNKRFASNSDLNIHVRTHTGERPYVCEICKKAFARLSTLNRHMLTHTNEAPYKCRLCPRAFTERYGLKKHIETHIAENSCQCETCGKWFTSSVNLRRHSKVHTGRESHICNICKKAFLRSENLKRHVLTHTKQTSYVCKICRKTFCERTALKIHVRTHTGERPHVCEICKKTFSQSAHLKQHLSTHTGEKNCRCEMCGKGFTTRGDLTRHIRVHSGEKPHVCKICNRAFTQLGTLRRHILTHSDQKNADQTQYKCELCQKAFSRHRSLRRHVRTHTGQRPYKCEICEKAFGQLNTLTRHMLTHTKERPYKCEICDRAFAQAYSLKIHLFKHTNENPFFCKLCDVSFKSDTHLKKHKMKHGKEEVIEESQDQKSDENSVSVKLEDDTTGAENAVEKTRGTLRTRGGQIIAYADDLVVITKQRKILEGILEEIEVEGRRIGLEINIDKTKIMRIGSQKTTGRIRIGRYEVEEVNKFKYLGVTITNNGEKQEEIREKIQAANRTYYANKKILCSKSINTSTKIKMYRTIIRPILTYAAETMSFTQREQQMLNVMERKIMRTILEPVKVGENEIRRRMNHEITEKLDGVDIVTNIKSTRLGWLGHVWRSGADSKIRAIMEWKLGNRRRRGRPKSRWYEEVEEDLRRLGVRRWKEKAENRGEWKKITEDMKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-