Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014497.1:22514448-22516151[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00096 0.077 15.0 3.1 1 23 18 40 18 40 0.98

2 16 0.00076 0.062 15.3 5.8 1 23 46 68 46 68 0.98

3 16 8e-05 0.0065 18.4 1.1 1 23 74 96 74 96 0.98

4 16 0.00023 0.019 16.9 1.8 1 23 102 124 102 124 0.98

5 16 1.4e-05 0.0011 20.8 2.3 1 23 130 152 130 152 0.97

6 16 2.2e-06 0.00018 23.3 3.1 1 23 158 180 158 180 0.98

7 16 3.5e-06 0.00028 22.7 0.4 1 23 186 208 186 208 0.98

8 16 6.8e-05 0.0055 18.6 0.7 1 23 220 242 220 242 0.98

9 16 2e-05 0.0016 20.3 3.2 1 23 248 270 248 270 0.98

10 16 1.4e-05 0.0011 20.8 2.1 1 23 276 298 276 298 0.96

11 16 2.5e-05 0.002 20.0 0.1 1 23 304 326 304 326 0.98

12 16 8e-06 0.00064 21.6 0.8 1 23 332 354 332 354 0.98

13 16 3.2e-07 2.6e-05 25.9 0.7 1 23 360 382 360 382 0.99

14 16 3.7e-05 0.003 19.4 0.6 1 23 388 410 388 410 0.99

15 16 7.2e-05 0.0058 18.5 0.8 1 23 416 438 416 438 0.98

16 16 5.5e-05 0.0044 18.9 0.1 1 23 444 466 444 466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00096	0.077	15.0	3.1	1	23	18	40	18	40	0.98
2	16	0.00076	0.062	15.3	5.8	1	23	46	68	46	68	0.98
3	16	8e-05	0.0065	18.4	1.1	1	23	74	96	74	96	0.98
4	16	0.00023	0.019	16.9	1.8	1	23	102	124	102	124	0.98
5	16	1.4e-05	0.0011	20.8	2.3	1	23	130	152	130	152	0.97
6	16	2.2e-06	0.00018	23.3	3.1	1	23	158	180	158	180	0.98
7	16	3.5e-06	0.00028	22.7	0.4	1	23	186	208	186	208	0.98
8	16	6.8e-05	0.0055	18.6	0.7	1	23	220	242	220	242	0.98
9	16	2e-05	0.0016	20.3	3.2	1	23	248	270	248	270	0.98
10	16	1.4e-05	0.0011	20.8	2.1	1	23	276	298	276	298	0.96
11	16	2.5e-05	0.002	20.0	0.1	1	23	304	326	304	326	0.98
12	16	8e-06	0.00064	21.6	0.8	1	23	332	354	332	354	0.98
13	16	3.2e-07	2.6e-05	25.9	0.7	1	23	360	382	360	382	0.99
14	16	3.7e-05	0.003	19.4	0.6	1	23	388	410	388	410	0.99
15	16	7.2e-05	0.0058	18.5	0.8	1	23	416	438	416	438	0.98
16	16	5.5e-05	0.0044	18.9	0.1	1	23	444	466	444	466	0.98

Sequence Information

Coding Sequence: ATGAGTGGTTCAAAAATACATTTGTTGGGCACAAACAAATGGCGCAACTCACACAAATGTGATATTTGCAAGAAAGTGCTCTCCAATCGTTGCGCTTTAATGAGTCACGTTCTAACTCATACTGGAgagaagcctcacaaatgtgagaTTTGCCAGAAAGCTTTCACCGTTCGTTGCACTTTAACAAGACACTTTTTAACTCACACgggagaaaagcctcacaaatgtgatgTTTGCCAGAGGATGTTCTCTGGTCGTTCAGCTTTAATGACGCACCTTGTAACACATACgggagaaaagcctcacaaatgtgaaatttgccagaaagcttTCTCCGCTGGTAGCACTTTAACAAGACACTTTTTAACCCACACGGGAGAAAAGCCTCACACATGTGATGTTTGCCAAAGGATGTTCACTGATCGTTCGACTTTAATGAAGCACCTTGTAACACATACGAGAGTAAAGCatcataaatgtgaaatttgccagaaaacgTTCTCTATACGTTCCGCTTTAACAAGGCACCTTAAAACACATGTGGAAGAAAAGCCTTACGAGTGTGAGATTTGCAAGAAAGTGTTCGGACTATTAAAGAATTTAAAGCGGCATATGTTGATCCATGCTGACAATAGATCTGTGAAAACGGAAACAccatacaaatgtgaaatttgtcaaaaagtgTTTCGGTGGCGTTACTTGTTAGCAAGACACATTACCTCTCATACTGGAGAAAGACCTTTTGAGTGCGAAGTGTGCGGCAAATGTTTTAGAAAAAATTCCAAGCGTATAAGTCACATGAAGATCCACACAGGTGAGAAGCCTCACATTTGCAAGGTTTGCAAGAAAGCATTTGCAAAATCAAACAGTTTGACAAGGCACATGGTAACGCACACCAACGAAGCACCGTACAAATGTGAACTTTGCCAGAAAGCGTTCGCTGGTCCGTTTTTGTTAAACAGGCACATTATTATTCATACGGGagaaaggcctcacaaatgtgaaatttgccagaaaggaTTCGCCGATGGTTCTACTTTAATTAAGCACGTTAGAACTCACACGGGACAGAGGCCTTACGAGTGCGAGATATGCAAAAAGGAGTTTGTTAGCTCACGCTCTTTAAATAGACACATGATGATGCACACTAATGAAGCAccatacaaatgtgaaatttgccaaaaagtgtTATTGCAGCGTTCCAGTTTAGTGAGACACATTAGGACACATACGGGACAGAGACCTTTCGAATGTGAGATTTGCAAGAAAACATTCGGGGAGTTTACCACTTTAAAGACGCATATGTTGGTGCACTGCACAGACACTCcgtacaagtgtgaaatttgtcaaatagGATTCGCAAGGCAAAATGGGTTGTCAAGACACCTTGGGACCCATGCGTCTCAAACGTTCAAGCAGTTTAACTCTTTAACCGGACATTTGTTGACGTGCACCGACAACAAAGAAGAAAATCCTGaaaagcttataaaaaatgaagaatatgaggtgaaaaatgaaaatagtgTTAGTGTAAAATTAGAACAGGATACAACAGATGAAGAAGAAAGTCCAGTTGCAGAGTCGGAAAATTTTGAACTGCTTATCAAATGTGAAAATAGTGTTGGTGTTAAAGAGGAGAATATTTTAgatgttttaaatttttcaaaactttccaaAAATGAAGATTGCGAGGTGAAAGACTAA
Protein Sequence: MSGSKIHLLGTNKWRNSHKCDICKKVLSNRCALMSHVLTHTGEKPHKCEICQKAFTVRCTLTRHFLTHTGEKPHKCDVCQRMFSGRSALMTHLVTHTGEKPHKCEICQKAFSAGSTLTRHFLTHTGEKPHTCDVCQRMFTDRSTLMKHLVTHTRVKHHKCEICQKTFSIRSALTRHLKTHVEEKPYECEICKKVFGLLKNLKRHMLIHADNRSVKTETPYKCEICQKVFRWRYLLARHITSHTGERPFECEVCGKCFRKNSKRISHMKIHTGEKPHICKVCKKAFAKSNSLTRHMVTHTNEAPYKCELCQKAFAGPFLLNRHIIIHTGERPHKCEICQKGFADGSTLIKHVRTHTGQRPYECEICKKEFVSSRSLNRHMMMHTNEAPYKCEICQKVLLQRSSLVRHIRTHTGQRPFECEICKKTFGEFTTLKTHMLVHCTDTPYKCEICQIGFARQNGLSRHLGTHASQTFKQFNSLTGHLLTCTDNKEENPEKLIKNEEYEVKNENSVSVKLEQDTTDEEESPVAESENFELLIKCENSVGVKEENILDVLNFSKLSKNEDCEVKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -