Xruf026445.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestobium rufovillosum
Gene Symbol
-
Assembly
GCA_963966045.2
Location
OZ014497.1:22456713-22458482[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00019 0.015 17.3 3.2 1 23 15 37 15 37 0.99
2 16 3.3e-06 0.00026 22.8 4.4 1 23 43 65 43 65 0.97
3 16 0.00088 0.07 15.1 7.1 1 23 76 98 76 98 0.98
4 16 0.00014 0.011 17.7 0.5 1 23 104 126 104 126 0.98
5 16 2.1e-06 0.00017 23.4 0.3 1 23 132 154 132 154 0.98
6 16 3.4e-07 2.7e-05 25.9 1.1 1 23 160 182 160 182 0.99
7 16 0.0043 0.35 13.0 4.2 1 23 188 210 188 210 0.99
8 16 6.1e-07 4.9e-05 25.1 0.5 1 23 216 239 216 239 0.98
9 16 1.1e-06 9.1e-05 24.2 0.6 1 23 245 267 245 267 0.98
10 16 1.2e-05 0.00093 21.1 2.6 1 23 273 295 273 295 0.97
11 16 1.7e-05 0.0014 20.5 0.5 1 23 306 328 306 328 0.99
12 16 2.4e-05 0.002 20.0 1.8 1 23 349 371 349 371 0.99
13 16 1e-06 8.2e-05 24.4 2.3 1 23 377 399 377 399 0.99
14 16 0.0011 0.088 14.8 2.1 1 23 410 432 410 432 0.99
15 16 5.3e-07 4.3e-05 25.3 2.2 1 23 438 460 438 460 0.99
16 16 4e-06 0.00033 22.5 1.5 1 23 466 488 466 488 0.99

Sequence Information

Coding Sequence
ATGTTACCAGGGCACATTACTATTCGTAATGAAGAAAGACCTTTCCAGTGCGAAGTGTGCGGCAATAATTTTAAACGAAAGTACAACTGCAATGCTCACATGAAAATTCACAACGGTGAGAAGCCTCATGTTTGTAAGGTTTGCAAAAAAGCTTTTTCGCGTCCAACACATTTAAAGAAACACTTACTGATGCACACCCTTGAAAGACCCACCGAGCAAACGACACACAAATGTGACATTTGCCAGAAAGTGTTTACCTGTCGTTTCCTTTTAAAGAGACATCTTAGAACACATACGGGAGAAAGGCCTTACAATTGTGAGATATGCAGGAAAGCGTTCGGGCAGTTAAACACTTTAAAGATGCATTTGTTGACGCACACCAAGGAATTGCCGTAtgaatgtgaaatttgcaagaaaGCGTTCTCCCGTTCGGGAAGTTTAAAGGGGCACTTGTTGATGCACACCAAGCCAACCGcgtacaagtgtgaaatttgcaagaaaGCGTTCAGGAAGTTGAGCAATTTAGAGACTCATTTATTGACTCACACCAACGAACGGTTATTCAAATGTGAAAATTGCCAAAAATCTTACGTCTGTCGTTCTAGTTTAATGTCGCACGTTAAGACTCATATGGGACAAGTGGTTTacaaatgcaaaaattgctatAAAGCGTTCGTAAACCAACCCAACTTGATACGTCACATAAACACTGCTCATTCGGGAAAACTACCCTTTAAGTGTGAAGTGTGCGGGAAAAGTTTCGCCGGAAAGTCCACCTATAGAGTTCACATGATGCAACACACAGGTCAAAAACCTCACGTTTGCGAAATTTGCAAGAAAGCGTTCAGGCAATTAGGACATTTAAAGTCACATGTATTGACGCACGGTGATGAAAGTCTCATCAAAACTGAACtgtacaaatgtgaaatttgccagaaaacgTTCGCCTGGCCCTATATGTTAAAAACACATATAAACACTCACAAATGTGAGGTTAGCAAACAAGTGTTCCAGCAAGTGGGAGATTTAAAGAAGGAAATGCTatacaaatgtgaaatgtgtcAAAAGGGCTTCGCCAAGCAATATAGGTTGTCTCGACACCTCatgactcatacaggacaaaggCCTTACGAGTGTGAGGTTTGCCACAAAGCTTTCAGTCAATTGGGACATTTAAAGTCTCACATATTAACACACAGTGAAGTAAGTCTCATCAAAACTGAACCATATAAATGTGGAACGTGCCAGAAAGCGTTTGCCTGGCGATGTTTATTAACAAGCCACattaggactcatacgggagAGACCCCTTACGAATGTGATGTTTGCAAAAAAACGTTCGCTCAGCAATACATGCTAAGAAGGCACACGAAGACTCATATGGAGCAAATACCTTACAAATGTGAGGTTTGCAAGAAGGCGTTCACCGAGCGATACCTATTAACAAATCACGTTAAGACTCATAAGGAACATACcaatgaaaatactgtttgcGGTGTTTATTTTAAATCGGAATCGCAAGATAAGCAGTCCAATGAAAGTGGTGTCAGTGTGAAATTGGAAGAGAATATACTGGATGaagaagaaaatgccgttactGGGtgtagaaattttgaaaaacttatCAAAAATGCAGAGCGTgagatgaaaaatgaaaatactgTCAGAGTAAAAGAAGACGAGGATGTTGTAGACGAAGAAAGTGCTGGAAATTTTGTAAACCTCTTCAAAATTGAAGAGTATGAAGTGAAAGATGAAGATGGCccatga
Protein Sequence
MLPGHITIRNEERPFQCEVCGNNFKRKYNCNAHMKIHNGEKPHVCKVCKKAFSRPTHLKKHLLMHTLERPTEQTTHKCDICQKVFTCRFLLKRHLRTHTGERPYNCEICRKAFGQLNTLKMHLLTHTKELPYECEICKKAFSRSGSLKGHLLMHTKPTAYKCEICKKAFRKLSNLETHLLTHTNERLFKCENCQKSYVCRSSLMSHVKTHMGQVVYKCKNCYKAFVNQPNLIRHINTAHSGKLPFKCEVCGKSFAGKSTYRVHMMQHTGQKPHVCEICKKAFRQLGHLKSHVLTHGDESLIKTELYKCEICQKTFAWPYMLKTHINTHKCEVSKQVFQQVGDLKKEMLYKCEMCQKGFAKQYRLSRHLMTHTGQRPYECEVCHKAFSQLGHLKSHILTHSEVSLIKTEPYKCGTCQKAFAWRCLLTSHIRTHTGETPYECDVCKKTFAQQYMLRRHTKTHMEQIPYKCEVCKKAFTERYLLTNHVKTHKEHTNENTVCGVYFKSESQDKQSNESGVSVKLEENILDEEENAVTGCRNFEKLIKNAEREMKNENTVRVKEDEDVVDEESAGNFVNLFKIEEYEVKDEDGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-