Xruf043462.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Xestobium rufovillosum
Gene Symbol
-
Assembly
GCA_963966045.2
Location
OZ014502.1:26262625-26264902[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.33 27 7.0 0.1 1 13 22 34 22 41 0.84
2 25 3 2.4e+02 4.0 1.9 3 15 50 62 48 70 0.77
3 25 3.1e-07 2.5e-05 26.0 0.3 1 23 76 98 76 98 0.98
4 25 0.001 0.084 14.9 3.4 1 20 104 123 104 125 0.96
5 25 0.0096 0.78 11.9 2.2 1 20 128 147 128 148 0.95
6 25 7.4e-06 0.00059 21.7 0.9 1 22 156 177 156 180 0.91
7 25 0.00065 0.052 15.6 4.1 1 21 180 200 180 202 0.94
8 25 3.1e-06 0.00025 22.8 3.6 1 23 208 230 208 230 0.97
9 25 0.00017 0.013 17.4 3.7 1 23 236 258 236 258 0.98
10 25 0.065 5.2 9.3 3.3 1 21 264 284 264 286 0.92
11 25 0.00022 0.017 17.1 2.1 2 21 293 312 292 314 0.94
12 25 2.2e-06 0.00018 23.3 1.6 1 23 319 341 319 341 0.99
13 25 1.3e-05 0.001 20.9 1.2 2 23 348 369 347 369 0.97
14 25 4.1e-05 0.0033 19.3 2.9 1 23 375 397 375 397 0.98
15 25 2.7e-05 0.0021 19.9 2.9 1 23 403 425 403 425 0.98
16 25 1.5e-06 0.00012 23.9 3.4 1 23 431 453 431 453 0.99
17 25 0.4 32 6.8 1.7 1 20 459 478 459 481 0.87
18 25 1.5e-05 0.0012 20.7 2.4 1 23 487 509 487 509 0.98
19 25 8.3e-08 6.7e-06 27.8 3.5 1 23 515 537 515 537 0.99
20 25 0.00048 0.039 15.9 0.8 1 23 543 565 543 565 0.97
21 25 0.00017 0.013 17.4 0.7 2 23 572 593 571 593 0.98
22 25 0.24 20 7.5 3.8 1 21 599 619 599 621 0.95
23 25 0.053 4.3 9.5 3.3 1 23 627 649 627 649 0.97
24 25 0.0036 0.29 13.2 1.4 1 22 686 707 686 710 0.90
25 25 0.0052 0.42 12.7 0.4 1 22 716 737 716 737 0.93

Sequence Information

Coding Sequence
ATGTCGTTTTGTGATTCAGTTAACTTAAATTACAACTCGAAAGCGCATACAGAAGAAAGACGGTACAATTGTAAAATATGCAGTAAAGTGTTTGGTCAGCTCGCAACTCCAAAAGTTCATGTGGTACGCTATGAGGAGCAGAGCAACTGCAAAAATTGTAATAAAGCATATCGCCAGTTCTCCACCTCAAAGTTCCATATGGTACGTCACGGAGATGAGACGCCCTACGTATGCAATAAGTGCGATAAAGCATTTAGTCAGCTCTCGACTTTAAGGGCCCACATCATTTCGCACAATAAcaaaaagccccacaaatgcaAAAAGTGTAACAAAAGATTTCATACACTCTCAAGTATGAAGGTCCATATGGACGAGAGGCCCCACAAAtgcaaaatatgtaataaagaGTTTCATACACTCTCGCTTTTCAAGGGTCATTTGGTGTGCCACACGAACCAGAGGCCTCACGAATGCACAATATGTAGTAAAACATTCCGTACACGCCAGAGTTTAAAGATCCATATGAACGAGAAGCCACACAAATGCGAAATATGTAACAAAGGATTCCATAGTCGTTATCATCTTAAGGTCCATttgatgtgccacacagatgAGAGACCTCATCAGTGCGAAATTTGTGATAAAGCATTCCGTACACACTCGAATCTAAGGATCCATTTGATGTTCCACGCAGACGAGAGGCCCCATAAATGTGAATTATGTAACAAAGCATATCGTACACCCCAGTGTTTAAAGATTCACATGGTAACCCATTCGGACGAGATGGCTCATAAATGCGAAATATGTGAAAAATCATTTCGTTGGCGCTCTAGTCTAGTTGGTCATTTGAAGTGCCACGCAGATGAGGGGTCGCTCAAATGCGAGATATGCGAAACCGTGTTCAGTCTGTACTCAGATTTAAAGCGTCATATGAGATGCCACGTTAAGAGAccctacaaatgtgaaatatgtgagAAACGGTTCGATCGATACTCCACTCTAAAGCTTCACATGTTATCTCATACAGATTTGAAGCCCCTTAAATGCAAAATATGTGAGGAAGGGTTTCGTTATCCAAAGTCTCTGAAAAGTCACATGAAGCGTCACACTGATGAgaggccccacaaatgtgaaatatgtaacaaAGCGTTCTTTCTGCCCCACAGTCTAAAAATTCACATGAGGTGGCACACGGGTAATAAGCCCCACAAATGCGAAATATGTGAAAAAGCCTTCTTTCTGCCATCTCATCTGAGGTTGCATATGAGGCTTCACACGGGAGAGAgaccttacaaatgtgaaatatgtaagaaGGACTTCATTCGGTCATCACATTTAAGTGATCATATGAGGTATCATAGTGACACGAAATCCTACCAATGTGAAATATGTGAAAAGGCATACTTTCTACCTTCTCAGCTAAGCTTCCATGTGAGATGCCACTCGAATGAGAGGCCACACAAATGCAATATATGCAATAAGGCGTACCAAACGCGTCCATCTCTAAAGAGACACATACTGACTCACTTGAATGAGAATCCCTACAAATGCAAAATATGTGAGAAGGTGTACACCCACAACAGCAATCTAATCCGTCACATGAAGTCCCACACTGATGGAAAGTCCTACAAATGCGAAATATGTCAAAAAACGTTTCTTTTTCCCTCTTCTCTGAAGCTGCATTTGGTATCTCATACGGACGGCAAGCCCAACAAATGCGACATATGTAAAAAAGTGTTCCTTCGGCTCCCAAGCCTGAAGGTCCATATGAGGAGTCACACAGAAGAGAAACgctacaaatgtgaaatatgtgatGACGCTTTCCACGGCTACTCGTTTCTCCAGCGTCACATAAAATGTCACGCGGACGTCTGGCCCCACAAGTGCGACATCTGCGGGACGTGCACTCTGAACAATAATTTGCTGGAAAAGCACCGTTCGATCCACACCCAAGAAGGAAGCTCCGACTCTAAATCGAAACAGACATGCCCGATCTGTCTCAAGAAAGTCACAAATCCGAAAAGGCACAGTAAGACCCACACAAACGATAAACCTTACGAATGCGAGCTGTGCCATAAACGTTTTCAAGAACGGTGGAACCTCGCGCAACACACGTCTTCGTTCGCTCATACCAAGAAGAAACCTTTCGAATGCGACTCTTGCGGTAAAAGGTTTATTAACAAGTACATTTTGCTGAAACACGCAAAGACTTGTTGA
Protein Sequence
MSFCDSVNLNYNSKAHTEERRYNCKICSKVFGQLATPKVHVVRYEEQSNCKNCNKAYRQFSTSKFHMVRHGDETPYVCNKCDKAFSQLSTLRAHIISHNNKKPHKCKKCNKRFHTLSSMKVHMDERPHKCKICNKEFHTLSLFKGHLVCHTNQRPHECTICSKTFRTRQSLKIHMNEKPHKCEICNKGFHSRYHLKVHLMCHTDERPHQCEICDKAFRTHSNLRIHLMFHADERPHKCELCNKAYRTPQCLKIHMVTHSDEMAHKCEICEKSFRWRSSLVGHLKCHADEGSLKCEICETVFSLYSDLKRHMRCHVKRPYKCEICEKRFDRYSTLKLHMLSHTDLKPLKCKICEEGFRYPKSLKSHMKRHTDERPHKCEICNKAFFLPHSLKIHMRWHTGNKPHKCEICEKAFFLPSHLRLHMRLHTGERPYKCEICKKDFIRSSHLSDHMRYHSDTKSYQCEICEKAYFLPSQLSFHVRCHSNERPHKCNICNKAYQTRPSLKRHILTHLNENPYKCKICEKVYTHNSNLIRHMKSHTDGKSYKCEICQKTFLFPSSLKLHLVSHTDGKPNKCDICKKVFLRLPSLKVHMRSHTEEKRYKCEICDDAFHGYSFLQRHIKCHADVWPHKCDICGTCTLNNNLLEKHRSIHTQEGSSDSKSKQTCPICLKKVTNPKRHSKTHTNDKPYECELCHKRFQERWNLAQHTSSFAHTKKKPFECDSCGKRFINKYILLKHAKTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-