Xruf009864.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:43702093-43716114[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.019 1.5 11.0 0.1 6 23 18 35 16 35 0.97 2 28 0.00027 0.022 16.7 0.3 2 23 76 98 75 98 0.95 3 28 0.14 11 8.2 4.7 1 23 239 262 239 262 0.93 4 28 0.0006 0.049 15.6 1.9 1 23 267 289 267 289 0.97 5 28 0.0052 0.42 12.7 1.2 1 23 295 318 295 318 0.94 6 28 7.1e-06 0.00057 21.7 0.7 1 23 323 345 323 345 0.99 7 28 0.015 1.2 11.2 0.3 2 23 353 375 352 375 0.94 8 28 0.05 4 9.6 1.3 1 23 383 405 383 405 0.98 9 28 0.0032 0.26 13.4 0.3 2 23 412 433 412 433 0.92 10 28 5e-05 0.004 19.1 0.8 3 23 441 462 439 462 0.97 11 28 1.2e-05 0.00097 21.0 0.1 1 23 521 543 521 543 0.98 12 28 0.0088 0.71 12.0 1.6 1 23 549 571 549 571 0.97 13 28 0.00021 0.017 17.1 1.4 1 23 577 600 577 600 0.96 14 28 0.043 3.5 9.8 9.3 1 23 605 627 605 627 0.97 15 28 0.0049 0.39 12.8 1.6 1 23 636 659 636 659 0.97 16 28 3.1e-05 0.0025 19.7 3.0 1 23 665 687 665 687 0.98 17 28 7.7e-06 0.00062 21.6 0.1 1 23 693 715 693 715 0.98 18 28 2.9e-06 0.00023 22.9 0.8 1 23 721 743 721 743 0.99 19 28 2.6e-05 0.0021 20.0 0.9 1 23 749 771 749 771 0.98 20 28 4.9e-05 0.004 19.1 0.3 1 23 818 840 818 840 0.98 21 28 0.017 1.3 11.1 2.3 1 23 846 868 846 868 0.97 22 28 0.002 0.16 14.0 1.3 1 23 874 897 874 897 0.97 23 28 0.0023 0.18 13.8 7.6 1 23 902 924 902 924 0.97 24 28 0.14 11 8.2 4.3 1 23 933 956 933 956 0.96 25 28 3.1e-05 0.0025 19.7 3.0 1 23 962 984 962 984 0.98 26 28 3.9e-05 0.0031 19.4 0.1 1 23 990 1012 990 1012 0.98 27 28 2.5e-05 0.002 20.0 1.8 1 23 1018 1040 1018 1040 0.98 28 28 0.0018 0.14 14.2 0.5 1 23 1046 1068 1046 1068 0.98
Sequence Information
- Coding Sequence
- ATGAGCAGTGTTGGTTTTCGTGGAACTTTGAGATCCAGACAATATTCTTCTTGCGGAACTAAGTATCCAACAGCGAAGTCATACGAACGTCATATGGAAACTCATGACCCaaattacataatacataatacacaATGGAAGAGAACATCAACTGGCAATTATTATCGCCAAGATGAACATTGCTATAAGTACACAGCTATAATTAAAAAGTCTGAGGACGAATTAAAGTGTGAAGAATGTGGAGCATGTTTCATTTCCAAGGAGTTATTGAATGAGCATGAAAATATGATTCATCTTAGAACCATAGAAACGCAAACTGAAGATCCAGAGAATGAGGATCAGTTAGAAACTGGCGACCCAAATTCCGTAACTTCCAAcgagtataataataatatcgctCAGGTTATGATAAGAAATATTAAAACTGAAAAACCAGAGACATTTACAGGTATTCTTAGATTGACACTACATGGCTGCACCGAGCAAATAGAAAGGCAAACGAATAATTCGAATTTAATGCGTGGTTCTATCACGGTGACTGAAAAACCGAAAACAACTGGAAAAGCTTATATGCTTAAATGTTTAACTTCTTCTATCAAAGATGTAGAAACTCAAACACGAGGTCTCAAATGTGGGGGGTCAATAAACTGGGATTGGGACAAAAAATATCCTGTAATCGGTAATCATCAGAGAAAATCGCACTCGCTCAAGAAATACACTTGCCATGTTTGTCACAAACGTTTCGAGACAATTGAAGAGTCCCGAAAGCACAGACAAGAAAATCACACGGGGACCGAATTTCAGTGCGATTATTGCGGCAAATCCTATTCTTCCAAACTCATACTGAGGAAACACAAGGATACCCATGCTGTGGAACCTAAATTTAAGTGTAAACAATGTGATAAAGTGTTAGCTTCGAAGAACGGTCTTCACCAACACGAACTGAACGTTCATCAAGGCGTTAAATACGTTTGTGAAGTTTGCAACAAGTCGTTTAGGATACCCGAAAATTATAAGAGTCATCTGAAGACTCATGACCCTACTTATGCCCGGGTAAAATGCGAATATTGCGACAAATCTTTTATGAATGAAGCCGTTAGAAAAGTTCACGTTAAGAGAATTCATTCCGGAAGGTCCAAGAAACTGTATGTCTGTGAAATTTGCGGCTTAAAACTGTCGTGTAATACCAGCTTAAGAGACCACAGGCtgactcacacaggagaaaagcctAATGTTTGTGAAATTTGCGGAACTAGGTTTAGAACTACGCAGGGATTAAAAACTCACTCTGTGGTGCATACCAAAGAGAAACCATTTGGCTGTAAGCAATGCGGCAAGAAGTTCACTCAAAGACCCACACTCTCTTTACATATTCGGTCTGTACACGACAACCAAAAACCTTTTGAGTGCCATATTTGTCTGAAGAGAATCTTCATAACTCTTCGATTCAtcactgcaacaaacaaaaaagaacaTTCAAACTTAGTAGAAAGCAAAATTGTAAAGAACtctgaaaataaaaagaagCCTAAAGAAAAGAAATGTCGGGAAAAAGCATCTTATCCTTGCGATGTATGCGATAAAGTGTTCAAAATTCCAGCATACCTGCGAAAGCATCAAATAAGTCATGTAGTGGGCTTCCCTTTTAAATGTGAAGTTTGTGGCAAAGGTTTTAGATTAGCACGAAATTGTGTTACCCATCAATTATCGCACACCAACAACCACAAATATAAGTGCGAGGAGTGTGGCAAAGGTTATAATACGCGAACCGCTTACCAGCATCACGTAAGCGTAACTCACGAGGGTTTCAGATTCTGTTGCTCTGAATGTAAGAGGATGTTTAGGAGCCTAGATTGCTACAAAAAGCACAAACAGACTCACGATCCGAACTTTGTGAAGCCAGAGTTCAGTTGCTCTATTTGCAAGAAGACGTTGTACAGTCAAAAATCGCGCAATGCCCACATCAGGTACGTGCATCAAAACATGCACGAGTACGTATGCGAAGTATGTGGAAAATGTGTCACTACACCGCAAAGTTTGAGACATCACAAGATGACGCACACAGGGGAAAAGCCTTATGTTTGTAGCGTTTGTGGCAAAACCTTTATTTCGAGGACATTGTTGGCAGTTCATGAAAGGGTCCACACGAAAGCTAAACCTTATAAGTGTGATGTTTGCGACAAATCTTTCCGACAGTCTGGTGCACGTAAGGTCCATATGAGATTGCATACAGGAGAGAGGCCTTACGAATGCAGCATTTGCGATAAAACTTTTGCGGCCAAAACATCGTTGAACACTCACTCAAAGACGCATGGAACTAGAATTTACATAACTCTTCGATTTATCAccgcaacaaacaaacaagaaaATTCAAGATTAATAGAAGACAAAGTTAAAACGAACTCgggaaataaaaagaaacccGTAGAAAGGAAACGAGAAAAAACTTCCTATTCTTGTGATGTATGCAATAAAGTATTCCAATTTCCAGCCGCCCTGAAAAGGCACAGAAGCGTTCACATCGTTGGGTGCCCCTTTAAATGTGAAGTTTGTGgcaaagattttaaatttttacgaaGCTGCATTGCCCATCAACTATCGCACACAAACAACCACAAATATAAGTGCGAAGAGTGCGGTAATGGTTACAATACCCGGAATTCTTACCAGCATCATGTGAATATAGATCACAAGGGATTCAGATATTGTTGCTCTGAATGCCCGAGGACGTTCAAGAACATCTCTCACTACAAGAAGCACAAGCTGAAGCACGACCCGAACTTTGTAAGGCCTGAATTTAGTTGTCCTATTTGCAAGAAGAAATTGTACCACCCGAAAACGCGCGATAGACACATCAGACACGTACACGAGAAAGTGCACGAGTATGTGTGTGAAGTGTGTGGCAAATGTGTTACCACTCCACAAAGTTTGAGACATCACAAAATGACGCACACAGGGGAAAAGCCTTATATTTGTGATGTTTGCGGCAAAACCTTTATTTCGAGGAAAGAGTTGGGTATCCATGAAAGGGTCCATACGAAAGCTAAACCTTTTAAGTGTGGCATTTGCGACAAATCTTTCAGCCAGTGTGGTGCGCGAACGGTGCACATGAGATTGCACACGGGAGAGAAGCCTTACGAATGCAGCATTTGCCTTAAAACTTTCGCTGCGAAAACATTACTGAACACGCACTCGAAGATCCATGGGACTAGGTTGCAGTGA
- Protein Sequence
- MSSVGFRGTLRSRQYSSCGTKYPTAKSYERHMETHDPNYIIHNTQWKRTSTGNYYRQDEHCYKYTAIIKKSEDELKCEECGACFISKELLNEHENMIHLRTIETQTEDPENEDQLETGDPNSVTSNEYNNNIAQVMIRNIKTEKPETFTGILRLTLHGCTEQIERQTNNSNLMRGSITVTEKPKTTGKAYMLKCLTSSIKDVETQTRGLKCGGSINWDWDKKYPVIGNHQRKSHSLKKYTCHVCHKRFETIEESRKHRQENHTGTEFQCDYCGKSYSSKLILRKHKDTHAVEPKFKCKQCDKVLASKNGLHQHELNVHQGVKYVCEVCNKSFRIPENYKSHLKTHDPTYARVKCEYCDKSFMNEAVRKVHVKRIHSGRSKKLYVCEICGLKLSCNTSLRDHRLTHTGEKPNVCEICGTRFRTTQGLKTHSVVHTKEKPFGCKQCGKKFTQRPTLSLHIRSVHDNQKPFECHICLKRIFITLRFITATNKKEHSNLVESKIVKNSENKKKPKEKKCREKASYPCDVCDKVFKIPAYLRKHQISHVVGFPFKCEVCGKGFRLARNCVTHQLSHTNNHKYKCEECGKGYNTRTAYQHHVSVTHEGFRFCCSECKRMFRSLDCYKKHKQTHDPNFVKPEFSCSICKKTLYSQKSRNAHIRYVHQNMHEYVCEVCGKCVTTPQSLRHHKMTHTGEKPYVCSVCGKTFISRTLLAVHERVHTKAKPYKCDVCDKSFRQSGARKVHMRLHTGERPYECSICDKTFAAKTSLNTHSKTHGTRIYITLRFITATNKQENSRLIEDKVKTNSGNKKKPVERKREKTSYSCDVCNKVFQFPAALKRHRSVHIVGCPFKCEVCGKDFKFLRSCIAHQLSHTNNHKYKCEECGNGYNTRNSYQHHVNIDHKGFRYCCSECPRTFKNISHYKKHKLKHDPNFVRPEFSCPICKKKLYHPKTRDRHIRHVHEKVHEYVCEVCGKCVTTPQSLRHHKMTHTGEKPYICDVCGKTFISRKELGIHERVHTKAKPFKCGICDKSFSQCGARTVHMRLHTGEKPYECSICLKTFAAKTLLNTHSKIHGTRLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -