Xruf028371.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestobium rufovillosum
Gene Symbol
-
Assembly
GCA_963966045.2
Location
OZ014497.1:36500035-36514108[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0014 0.11 14.5 9.3 1 23 204 226 204 226 0.99
2 24 0.00088 0.071 15.1 1.5 1 23 232 254 232 254 0.99
3 24 2.4e-08 1.9e-06 29.5 1.3 1 23 260 282 260 282 0.99
4 24 3.9e-06 0.00032 22.5 1.5 1 23 288 310 288 310 0.98
5 24 2e-07 1.6e-05 26.6 0.1 1 23 316 338 316 338 0.99
6 24 1.1e-05 0.00091 21.1 2.3 1 23 344 366 344 366 0.98
7 24 2e-07 1.6e-05 26.6 0.4 1 23 372 394 372 394 0.99
8 24 7.9e-08 6.3e-06 27.9 0.4 1 23 400 422 400 422 0.99
9 24 6.1e-05 0.0049 18.8 1.0 3 23 430 450 428 450 0.98
10 24 3.5e-07 2.8e-05 25.8 0.9 1 23 456 478 456 478 0.99
11 24 1.3e-07 1.1e-05 27.2 0.4 1 23 484 506 484 506 0.99
12 24 2.9e-07 2.4e-05 26.1 0.7 1 23 512 534 512 534 0.99
13 24 5.4e-07 4.4e-05 25.2 1.0 1 23 540 562 540 562 0.98
14 24 0.00011 0.0086 18.0 3.0 1 23 568 590 568 590 0.97
15 24 1.8e-06 0.00014 23.6 1.7 1 23 596 618 596 618 0.98
16 24 3.9e-07 3.2e-05 25.7 0.3 1 23 624 646 624 646 0.99
17 24 6.1e-06 0.00049 21.9 3.2 1 23 652 674 652 674 0.98
18 24 5.4e-07 4.3e-05 25.2 1.2 1 23 680 702 680 702 0.98
19 24 3.6e-05 0.0029 19.5 3.0 1 23 708 730 708 730 0.99
20 24 3.8e-07 3.1e-05 25.7 0.9 1 23 736 758 736 758 0.99
21 24 2.6e-06 0.00021 23.1 0.3 1 23 764 786 764 786 0.99
22 24 4.4e-05 0.0035 19.2 0.2 1 23 792 814 792 814 0.99
23 24 8.6e-06 0.00069 21.5 2.0 1 23 820 842 820 842 0.98
24 24 7e-07 5.6e-05 24.9 1.5 1 23 848 870 848 870 0.98

Sequence Information

Coding Sequence
ATGACTGGAAAGAAGATATGTAGGACTTGTTTTAATATAATAGAAGAAAATGAGTTCGTTTATTTGTGTAAAGAAGACGGTGTAGATATAGAAAAGTCTGATATTTTAATTAATATACTTAAGCTTCTAATCTCAGAATTAGATGTAGAAATAGTAAAGCATCCCGTTATATGTGGTGCTTGTAAGATAGAATTGGAGAGAACTTGTGAATTTCGGGATATGTGTTTACAGAACAATAAAAAGATAATTAGATACGTTCAGAATTTAGAGAAGCCTAGACTTTTGTGTCACGACGATTTACTGGAGGCAATGCAGTTAAATACCACGGATATTAAGTTGTCAAATGTCATATCGCTTCACAACGGGGCTATAGAAAATAACGTAGATTTTTGTGGTGATGAAACGGAACAGGAAGAAAAGAAGGATATTCCCATAAAAGAAGAAATGGAAATTACTTTCGATGAAGAAGAAGATAACGTTATAAATCCTGTAGGTGCTTTCGAACAAATTTTTCCTAAACAGGAGTTCGTCGAAGGCACCGAAACTATTTACGGTGATAAATTCCTGAGTAAAAGCTTCCGTAAGAGACGCTACGACGAATACAAGCcatttaaatgtaaaatatgcAAGAAACACTTTAAATATCAGTGTTATTTAACGTACCATCTTCGGGTACACACTGGAGTCAAACCGTTTAAGTGCGACGTGTGTGATAAAAGGTTTTTGCTGAAAGGAACTTTGCAAATGCATACGAGGACTCATACGGGCGATAAACCGTTCACTTGTAAAGTTTGCGGCAAAAGTTTCATACAGAAAGGCTATTTGAAGATCCACATGCGTACTCACACAGGAGATAAGCCGTACAAGTGCGGGATATGCGAGAAGAGGTTTAGTCAAAAGGGAACGTTGCAGACGCATTTACAGTATCATTCCGGACACAAGCCATTTAAGTGCGACGATTGCGGGAAAGGGTTCATCCAGAAAGGAAATCTGGACGCCCACATGAAGATACATTCGGGGGTGAAACCCTTCGAATGTGAGGTTTGTAAGAAAAGCTTCGTTTTAAAAAGCAACCTCCACATCCACATGTACACCCATTCTGGCGAGAAACCGTTTAAGTGTGCCACTTGCGGCAAGGGTTTCGTCCAAAAGAGTAACTTAGAAATTCACGTGCGCACCCACACGGGCTACAAACCTTACAAATGCGAACTTTGCCCGAAGAGTTTCGTGCAAAAGGGCAACTTGGAGACGCACATGCTGACCCATTCTGGCGTCAAACCTTTCGGTTGCGATACTTGCGGTAAATGCTTTGCGTTGAAGAGCTATTTGGCGATGCACATGCAGATTCATTCGGGGGAGAAACCGTTTAAGTGCGATATGTGCGAGAAGAGTTTTAGGCAGAAGAGCGCTTTGGATATTCATATTAGGACGCACACGGGGATGAGGCCTTACGTTTGCGAGGTTTGCGATAGGAGTTTTATACAGAAGGGTACTTTGGAGACGCATATGCGTACCCACACTGGCAATAAACCGTACAAGTGTCTGGAGTGCGACAAGAGCTTCATACAAAAAGGAAATCTAGACATACACATGCGTAAACATACAGGCGAAAAACCATTTAAGTGTGAAACTTGCGAGAAGAGTTTCATTCAGAAAAGCAATCTCGAGACGCACCTTCAAATACACGCAGGTATTAAACCCTTTAAATGCGAGACTTGCGGAAAATGTTTCGCTCTAAAAAGCTACCTCCAGATGCACAATCAGATCCATACAGGCGAGAAGAGGTTCATCTGCGACGTTTGCGACCGGTGTTTTCGACAAAAAGGGGCTCTGCAGATACACACGAGAACTCACACCGGTCACAAGCCTTATAAGTGCGATGTTTGCGGCaaagattttgttcaaaaaggATCTCTAAAAGCTCACACGCGGATACATACGGGGGACAGACCGTTTGAGTGTGAGACTTGCCTTAAGACTTTCTGCCAGAAGAGTACGCTGGAAGCTCACCTGCGCACCCACACGGGCGACAGACCTTTCAAATGCGACGTTTGCGAGAAGACGTTCGTCCAAAGAAGCAACTTGGAAACGCACATGTACTCGCACGCCGGCGTCAAACCGTTCAAGTGTGATCTCTGCGAGAAATGTTTCGCGCTAAAAAGCTACCTCCAGATACACCGGAGGATACACACGGGCGATAAACCGTACTCCTGTAACATGTGCGAGAAGAGTTTCAACCAAAAAGGTGCGTTGCAGATTCACCAGAGAACGCACACGGGCGATAAACCGTATAAGTGCGATCTCTGCGGGAAGAATTTCATTCAAAAAGCCACGTTGGACGCCCACGTCAGGACGCATACCGGAGACAAGCCCTTCAAGTGCTCGGTTTGCCTGAAAGGCTTCGGTCAGAGAGGCGGGTTGCAGGTACACATGCGGATTCATACGGGACAGAAACCGTACGCTTGTGAAATCTGCAATCGGCATTTTAACCAGAAGGCAACCCTAGACACTCACATGCGTACCCACACCGGCTACCGCCCCTTCATATGTTTCCTCTGCAACAAGGGCTTCTCCCAAAAATCCAACCTCGAATCTCACCTCAGAACGCACGTCGAAGCTAGCTTCATGCCAAAAATCGAAGAAGAAGACACTAGCTACGGCGATTTGACTGACACCAACGTAATGGAACCGCAAATTGAGCTGCACTCCGAGGAGACCGAGGACGAGAAAAAACCGGTGGTGATCTTAGATTAA
Protein Sequence
MTGKKICRTCFNIIEENEFVYLCKEDGVDIEKSDILINILKLLISELDVEIVKHPVICGACKIELERTCEFRDMCLQNNKKIIRYVQNLEKPRLLCHDDLLEAMQLNTTDIKLSNVISLHNGAIENNVDFCGDETEQEEKKDIPIKEEMEITFDEEEDNVINPVGAFEQIFPKQEFVEGTETIYGDKFLSKSFRKRRYDEYKPFKCKICKKHFKYQCYLTYHLRVHTGVKPFKCDVCDKRFLLKGTLQMHTRTHTGDKPFTCKVCGKSFIQKGYLKIHMRTHTGDKPYKCGICEKRFSQKGTLQTHLQYHSGHKPFKCDDCGKGFIQKGNLDAHMKIHSGVKPFECEVCKKSFVLKSNLHIHMYTHSGEKPFKCATCGKGFVQKSNLEIHVRTHTGYKPYKCELCPKSFVQKGNLETHMLTHSGVKPFGCDTCGKCFALKSYLAMHMQIHSGEKPFKCDMCEKSFRQKSALDIHIRTHTGMRPYVCEVCDRSFIQKGTLETHMRTHTGNKPYKCLECDKSFIQKGNLDIHMRKHTGEKPFKCETCEKSFIQKSNLETHLQIHAGIKPFKCETCGKCFALKSYLQMHNQIHTGEKRFICDVCDRCFRQKGALQIHTRTHTGHKPYKCDVCGKDFVQKGSLKAHTRIHTGDRPFECETCLKTFCQKSTLEAHLRTHTGDRPFKCDVCEKTFVQRSNLETHMYSHAGVKPFKCDLCEKCFALKSYLQIHRRIHTGDKPYSCNMCEKSFNQKGALQIHQRTHTGDKPYKCDLCGKNFIQKATLDAHVRTHTGDKPFKCSVCLKGFGQRGGLQVHMRIHTGQKPYACEICNRHFNQKATLDTHMRTHTGYRPFICFLCNKGFSQKSNLESHLRTHVEASFMPKIEEEDTSYGDLTDTNVMEPQIELHSEETEDEKKPVVILD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-