Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0004 0.24 13.0 1.8 12 39 84 109 67 113 0.87

2 6 0.0023 1.4 10.6 1.5 1 33 103 131 103 138 0.84

3 6 0.00082 0.48 12.0 3.8 6 40 136 165 131 168 0.88

4 6 0.0069 4.1 9.1 1.8 14 40 170 193 162 196 0.82

5 6 0.55 3.2e+02 3.0 0.6 18 32 202 218 199 224 0.79

6 6 0.25 1.5e+02 4.1 0.3 18 43 230 252 228 253 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0004	0.24	13.0	1.8	12	39	84	109	67	113	0.87
2	6	0.0023	1.4	10.6	1.5	1	33	103	131	103	138	0.84
3	6	0.00082	0.48	12.0	3.8	6	40	136	165	131	168	0.88
4	6	0.0069	4.1	9.1	1.8	14	40	170	193	162	196	0.82
5	6	0.55	3.2e+02	3.0	0.6	18	32	202	218	199	224	0.79
6	6	0.25	1.5e+02	4.1	0.3	18	43	230	252	228	253	0.86

Coding Sequence: ATGGATATCGATGGATGCTTACCGCCAGAAGCAAGAGTCGAAGAAATAGAAGTAATAATTTACGACAATTCTGATTTCTTCGAAGAATCATCGGAAGATGAGCCTTCGCGTCATTTTATGATAAGTAAAATAATAGACGAGCAGATGAAAATAGAAATCGAAGATCAGGACGTGTCGCAACAATCGGTACCTGTTCGCGATTACGTTAAAATCGACGAAATTAGAGAAAAACGAAAGAAAAGAATAGCAAAagagaaaactgaaaataaatgtaaGATTTGTGCTAAAGCAATAAAAGGCGGGCGTTCTAAGCTGTTGCGTCACATGTCTATTCATACTAAACAAGGAGACTTTTCTTGCAAGATATGCGATAAGAAATTCAGTCAAAAAGACTATTTAAACCGTCACTTAGAGCTTCACGAAGAAACGAACTACAAATGCAACATTTGCTGCAAAAGTTTCACTCGAAAAGACGGTTTGAACCGCCATTTACAAATCCACGCAGGTTTACAGAAATTTGAATGTAAACAGTGTAAAAAGAAGTTCAACGATAGTGGGAATTTATCGAAACACATGAATATTCATAACGGGATAAAACCGTATcagtgtaaaatatgtaaagtTAAATTTACGGTAAAATCGTCGTTAAACACTCATGAAAGGACCCACAATGGGGCGCGTCCATTTAAATGCCCGTTTTGCGACTTAGCGTTCAGTGCCTCGCACACGAGGAAGAAACATATAAACAGAAAACATAttaagaagaaataa
Protein Sequence: MDIDGCLPPEARVEEIEVIIYDNSDFFEESSEDEPSRHFMISKIIDEQMKIEIEDQDVSQQSVPVRDYVKIDEIREKRKKRIAKEKTENKCKICAKAIKGGRSKLLRHMSIHTKQGDFSCKICDKKFSQKDYLNRHLELHEETNYKCNICCKSFTRKDGLNRHLQIHAGLQKFECKQCKKKFNDSGNLSKHMNIHNGIKPYQCKICKVKFTVKSSLNTHERTHNGARPFKCPFCDLAFSASHTRKKHINRKHIKKK

Sequence clustering based on sequence similarity using MMseqs2