Xruf039412.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014501.1:9206221-9208025[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-07 8.2e-05 23.8 0.0 1 37 16 52 16 58 0.94
Sequence Information
- Coding Sequence
- ATGGATAagcagaaaaagaaagaaacgaGAAAATACTGCGGCTGGACCCCACAAGATATGGAGCATGCCATAACAGCATACAAAGAAAACCAGTGTGGTTTTAGCGAGTGCTGTAGAAGATATGGCATTCCAAAACCTACTTTAAGAAGACACTTGCTATCTTCAAATAAAAAAGCAAATGAAAATGTTCAATCTATGGGTCGCTTCACGGTCTTTGATGCCGAAATTGAAAGGGAACTGGCAGATCATATATTAAGATTGGAGGAAAGATTTTTTGGTGTCACCATTAGCGATGTTCGTCGCCTAGCATTTCAATTAGCTGTTCGGAATAATATTCGCCACAATTTTAACATGAACAAGCAAATGGCCGGCAAAGCCTGGTATTATTCATTCATGAAACGACACGATTTCTTATCACTTAGACAACCCGAGAAGATATCGATGGCCAGAGCCTCAGGATTTAACAAGGAAAACGTCTATGAATTCTTTGACATTTTGGAAAGATGCGTCGATGAAAACGGTTTTACAGCAATCACCATATTTAATGTCGATGAAAGTGGTTTCTCGACTGTGCAAAAaaagaatcaaaaaataatagcaaaaaagGGAAAGCATCAAGTTGGAGGTACATCAAGTGGTGAGAGAGGTGTAAACACCACCATCGTTTGCTGCGCTAGTGCAGCAGGTCAGTGCATCCCTCCTATGATTATTTTTAAACGGAAACGTTTGGCACCCGAACTTGCAATAGGTGCACCGCCTGGAGCTGTTGTCACTATATCTGATAGTGGCTACATAAATACAGAACTATTCGTTAAATGGTTAGAACACTTCATCGAGCACATAAAACACAGCCCGGAAAAAAAGGTGCTGATGTTACTTGATGGGCATACAACGCATTCCAAAAATTTGGAAGCGCTAGTTTTGGCTAGAAAACATGGTGTCGTGCTCTTACAGCTCCCTGGACATACGTCACACCGTTTGCAGCCGTTAGATAAGCAACCCTGGTTTTCTCAATATAACATGACAGCACTATTTTCTGATGCCTTTGCAAAAACTGCGACTATAAGCACAATTGCCAGCGGTTTTAAGAAAGCTGGAATTTGGCCTGTTGATCGCACCGTTTTTTCGGACTTCGATTTTATTGCTGCGAGTTTATTACTCCAGGAAAAATCAAACAACAGTGATGATCAAGAATATCCTAATCAAGTAACTTCAGAAAATACCAAAAACCAAACTGGATCAACAGAATTTAACACAAATGAAAGCCGCGAAAAAAAACAGTGTGAATTAGCAGACGGTAGTCAgctattgaaaaataataaagtgCCTCTTGATGTTTCTGTTGATGAAATTTGTCCATTGCCAGAGCACAAGAATATTGGGAAAAAAAGGAAGTTATGCCAACCAGCTGTTATTTTAAGCAGTACACCCTACAAAGGCGACCTGGAAAGCCAACAAACACAACGACAAAACAAAGCAAAGCAagtaaaaagaaatattttgactaCTTCCACTTCTTCACACGCAGCCTGCAGTTCAAAACCAATCAATCCGAAATTGACTACACTCGAAAAAACTAACAATGTGGAAATTGACTTTAATCCAAATGATTGGTTTTGCTTCATTTGTGAAGAAAATCTAGTTGAAGATATGGTACAGTGCCTTAAATGTAAGAAATGGGTGCACACATCCTGTGCAGGAAAgggaaagaaatttaaaaaagataTCTGTGAAAACTGCCATTAA
- Protein Sequence
- MDKQKKKETRKYCGWTPQDMEHAITAYKENQCGFSECCRRYGIPKPTLRRHLLSSNKKANENVQSMGRFTVFDAEIERELADHILRLEERFFGVTISDVRRLAFQLAVRNNIRHNFNMNKQMAGKAWYYSFMKRHDFLSLRQPEKISMARASGFNKENVYEFFDILERCVDENGFTAITIFNVDESGFSTVQKKNQKIIAKKGKHQVGGTSSGERGVNTTIVCCASAAGQCIPPMIIFKRKRLAPELAIGAPPGAVVTISDSGYINTELFVKWLEHFIEHIKHSPEKKVLMLLDGHTTHSKNLEALVLARKHGVVLLQLPGHTSHRLQPLDKQPWFSQYNMTALFSDAFAKTATISTIASGFKKAGIWPVDRTVFSDFDFIAASLLLQEKSNNSDDQEYPNQVTSENTKNQTGSTEFNTNESREKKQCELADGSQLLKNNKVPLDVSVDEICPLPEHKNIGKKRKLCQPAVILSSTPYKGDLESQQTQRQNKAKQVKRNILTTSTSSHAACSSKPINPKLTTLEKTNNVEIDFNPNDWFCFICEENLVEDMVQCLKCKKWVHTSCAGKGKKFKKDICENCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01535975;
- 90% Identity
- -
- 80% Identity
- -