Xruf036816.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014500.1:17122465-17123076[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-06 0.00024 22.3 0.0 3 36 9 42 7 49 0.89 2 2 4.2 6e+02 1.8 0.0 27 40 97 110 93 115 0.87
Sequence Information
- Coding Sequence
- atgcCTTACAATCGTTTAAGCGTAGATAATTTGAATACAGCTTTGCGTCTTATCCAAAATGGCGCTTCACAAAGAGAAATTGCTAGATTTTTTAATGTTTCGCATAGCGTACTAAGCAGAGCTCATCAACAACTTCAAACTACTGGAAGTGTTGCTTTCCGGCATGGCGGAGGTCGTCAAAGAAGTCTTACACCAGCGCAGGCAGATTATGTGCGCTTAACCGCTAGGCGAAATCCCACTCATACGTCAACTCAAATTAATAATGAGCTTCACGATGCTGCTGGAATTGATGTTTCCACTCGAACCATCAGAAGAAGGTTGAATGAGTCCAATTTAAGAGCTAGAAGGCATGCGACATGTTGCTTGCTTACTAGGCAGCATCGCGTTGCCCGAAGAATTTGGGCTGAAGAACATATAAACTGGGGCAATGAAGAATGGAGCCGATGCTTATTCACCGATGAATCAAAATTTCATCTACACCCTTCAGATCGAAGAGTGTTCGTGTGGAGAAGACCAGGTGAGCGTTATCTAGACCGTAATATGTCGCCCCGTGTAGCTTTTGGTGGTGGGGGTGTCACAGCCTGGGGAGGCATAACAGCCGCACTGACCTGA
- Protein Sequence
- MPYNRLSVDNLNTALRLIQNGASQREIARFFNVSHSVLSRAHQQLQTTGSVAFRHGGGRQRSLTPAQADYVRLTARRNPTHTSTQINNELHDAAGIDVSTRTIRRRLNESNLRARRHATCCLLTRQHRVARRIWAEEHINWGNEEWSRCLFTDESKFHLHPSDRRVFVWRRPGERYLDRNMSPRVAFGGGGVTAWGGITAALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536132;
- 90% Identity
- iTF_01536154;
- 80% Identity
- -