Xruf027237.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:28041649-28042167[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-07 9.8e-05 23.5 0.0 3 39 9 44 7 49 0.90 2 2 3.3 4.8e+02 2.1 0.0 27 40 97 110 93 115 0.87
Sequence Information
- Coding Sequence
- atgcCTTACAATCGTTTAAGCGTAGATAATTTGAATACAGCTTTGCGTCTTATCCAAAATGGCGCTTCACAAAGAGAAATTGCTAGATTTTTTAATGTTTCGCATAGCGTACTAAGCAGAGCTCATCAACGACTTCAAACTACTGGAAGTGTTGCTTTCCGGCATGGCGGAGGTCGTCAAAGAAGTCTTACACCAGCGCAGGCACATTATGTGCGCTTAACCGCTAGGCGAAATCCCACTCATACGTCAACTCAAATTAATAATGAGCTTCACGATGCTGCTGGAATTGATGTTTCCACTCGAACCATCAGAAGAAGGTTGAATGAGTCCAATTTAAGAGCTAGAAAGCATGCGACATGTTGCTTGCTTACTAGGCAGCATCGCGTTGCCCGAAGAATTTGGGCTGAAGAACATATAAACTGGGGCAATGAAGAATGGAGCCGATGCTTATTCACCGATGAATCAAAATTTCATCTACACCCTTCAGATCGAAGTGTTCGTGTGGAGAAGACCAGGTGA
- Protein Sequence
- MPYNRLSVDNLNTALRLIQNGASQREIARFFNVSHSVLSRAHQRLQTTGSVAFRHGGGRQRSLTPAQAHYVRLTARRNPTHTSTQINNELHDAAGIDVSTRTIRRRLNESNLRARKHATCCLLTRQHRVARRIWAEEHINWGNEEWSRCLFTDESKFHLHPSDRSVRVEKTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536132;
- 90% Identity
- iTF_01536154;
- 80% Identity
- iTF_01536154;