Xruf008687.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014493.1:28471104-28487668[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-11 8.8e-09 36.5 0.0 1 39 298 337 298 341 0.90 2 4 8.4e-12 1.2e-09 39.2 0.1 1 39 352 390 352 393 0.95 3 4 2.8e-17 4e-15 56.8 0.0 1 45 407 452 407 452 0.97 4 4 3.5e-15 5.1e-13 50.1 0.0 1 39 459 498 459 502 0.93
Sequence Information
- Coding Sequence
- ATGCCTCATAACTCTTCATTAAAAAGCGTTTTTCCCGATAGTCCTCCAGGGCTTTACGTTAAGTTATCTACCCATTGGTGTGATTTACGATCCCTCCTAAGAACTGCTGACCAGTTAAAAATCAAAGGACTCTGCGAATCACCAGAGGAAAAGGACGAAGAAACACTGCCTGTATTTACAAATAGGAGTTATACAAAAGCCCGACATATACCATCGCCAAAACACATTAGAGCTGAACCAGTCAGAAGACAAATTCAGAGAAGAGAAAGATTTGAGAAGGAACATATATCAGATGGTGAAGAAAAGGAACAGAAAGATGAAGTTGTAGAATATAActcagaagaagaagaagaggaacaCGAGGACTTTAATGAAGAAACTAAAAAAAGGAAATTAAATCAAGGCCAGTCTAAATCGGGCAACATGAGTAGTCATGGACTTTTGGCTGGTCAGCTTGGAGTGGACACTGATGATTTTCCACCTGAACCACCCGCCCCTTCGGCAACCCCTGTTGGTCATGTAGATATGCAAGATCATTCACCCACTAGAACATTATTCACTAATACCTCAATTCATAGGACTGATTTATCAGatTCAATCAGTATAAAATATTGTGATATAAAGAAAGAACCTGatattaaatttgaaacattAAGATCTTATGATCAAGACTCGTTGATGGAGATGGATTCAAGGATGTCTGGCCCTGATCATTCGATGGATAGCCATGAAGATGCAGAACAGATGCATAATATGATGGTTACTCCCGAACTAATGGGCATGATTCCTGGAGGATCTAGTAATAGAGATGGAAGTAATACTGATGTACCTGGATTAAAAAGCAATGGACATTCGGAACATACAAGGCACACTGGTGGTCCCAAAACTTGGACACAAGATGATATGGAACTAGCACTTGATGCTCTTAGAAATCACAATATGAGCTTAACAAAGGCATCTGCAACATACGGAATTCCCTCCACAACTTTATGGCAAAGAGCCCATAGATTAGGAATTGATACACCAAAAAAAGAAGGCCCCACGAAGTCGTGGACCGAAGAAAGTCTGAATAATGCTTTAGAGGCTTTAAGAACAGGCACGATATCTGCAAATAAAGCCAGCAAAGCATACGGTATTCCCAGCAGCACTTTGTACAAAATAGCTAGACGTGAAGGTATACGATTAGCAGCCCCGTTTAATGCAGCTCCCACGACTTGGTCACCtgaagatttagaaaaagccttagAATCTATTAGATCAGGACAAACTTCTGTGCAACGAGCATCAACAGAATTTGGTATTCCAACTGGAACACTTTATGGGCGTTGTAAACGAGAAGGAATAGAATTGTCACGATCAAATCCAACTCCCTGGTCAGAAGATGCAATGGGAGAAGCATTAGAAGCTGTTAGGCTAGGCCACATGTCAATAAATCAAGCTGCAATACACTACAATCTTCCGTATTCATCTTTATATGGACGATTCAAGAGAGGGGTGAAATATGACACTGAAGGGATAGAACCTAATTCAGATAGCCAATCACAACTTGACgcacaaaatttattaatggAGTATCAGAGTCAACAAATTCAATACCACCATGAGTCGAATAGCTGA
- Protein Sequence
- MPHNSSLKSVFPDSPPGLYVKLSTHWCDLRSLLRTADQLKIKGLCESPEEKDEETLPVFTNRSYTKARHIPSPKHIRAEPVRRQIQRRERFEKEHISDGEEKEQKDEVVEYNSEEEEEEHEDFNEETKKRKLNQGQSKSGNMSSHGLLAGQLGVDTDDFPPEPPAPSATPVGHVDMQDHSPTRTLFTNTSIHRTDLSDSISIKYCDIKKEPDIKFETLRSYDQDSLMEMDSRMSGPDHSMDSHEDAEQMHNMMVTPELMGMIPGGSSNRDGSNTDVPGLKSNGHSEHTRHTGGPKTWTQDDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLEKALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYDTEGIEPNSDSQSQLDAQNLLMEYQSQQIQYHHESNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -