Basic Information

Insect: Xestia xanthographa
Gene Symbol: -
Assembly: GCA_905147715.1
Location: LR990642.1:19212303-19215411[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.5 1.5e+03 2.0 0.1 6 21 26 41 24 42 0.90

2 10 0.019 3.8 10.1 2.8 1 23 49 73 49 73 0.97

3 10 0.014 2.8 10.6 0.4 1 23 179 201 179 201 0.98

4 10 3.3 6.6e+02 3.1 0.7 1 12 207 218 207 220 0.81

5 10 0.0017 0.34 13.4 1.2 1 23 269 291 269 291 0.99

6 10 0.0077 1.5 11.4 0.3 1 23 301 323 301 323 0.99

7 10 4.3 8.6e+02 2.7 2.1 2 16 388 402 387 404 0.85

8 10 2.6e-05 0.0052 19.1 0.2 1 23 535 557 535 557 0.98

9 10 0.00026 0.052 16.0 0.3 1 23 564 587 564 587 0.95

10 10 0.00041 0.081 15.4 0.4 2 23 625 646 624 646 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.5	1.5e+03	2.0	0.1	6	21	26	41	24	42	0.90
2	10	0.019	3.8	10.1	2.8	1	23	49	73	49	73	0.97
3	10	0.014	2.8	10.6	0.4	1	23	179	201	179	201	0.98
4	10	3.3	6.6e+02	3.1	0.7	1	12	207	218	207	220	0.81
5	10	0.0017	0.34	13.4	1.2	1	23	269	291	269	291	0.99
6	10	0.0077	1.5	11.4	0.3	1	23	301	323	301	323	0.99
7	10	4.3	8.6e+02	2.7	2.1	2	16	388	402	387	404	0.85
8	10	2.6e-05	0.0052	19.1	0.2	1	23	535	557	535	557	0.98
9	10	0.00026	0.052	16.0	0.3	1	23	564	587	564	587	0.95
10	10	0.00041	0.081	15.4	0.4	2	23	625	646	624	646	0.98

Sequence Information

Coding Sequence: ATGGCCGACAGCAGAGAAAATGGAGAGAAGGGACTTTTTCACAACGTCTTCAGAGACAAGACTGAAATTAAAAGGTGTACATTGGGGTTCATCTTTGAATCAAGTTTTAATGATCACATCAACCGCAAGTCTGTAAGCATTACCTACATGTGCCGGAATTGTAATCTACCGAGAACTTTTTTCAATAGATGTAATTTACTTGTTCATATAAGATCACATGGTTTTAAAACAGCTACAATCAATCTTACAGACTTAATATTAGAACCATTACCGTTGAGTAACTACAAAATTAAACCTTTAAGTCCACCAAGAaacgatttaatgatatcgcCCGTAACGACAGCAAGTGAAATTCCAACAGCAATTGTAATTCCAACAACAAGTGAAATTCCAACAAGTGAAAATATATCAGCACAACGGAAACCTAAATTTGCCTCAGTACATTGTTTGGAATGTAAAGAAAATTTAACCACCACGGGGTCTCCTAATAAAGATAGAGCCAGTCATTATATGCAGTTTACAAACGACGTTATATTTTCATGTCCTATATGTTTATTTGCACTGCCGAGTTTATGTGCATTCAAAGCACATATGCGTTTACATTTAAAACTTCCGCCTTATTGTTGCCCAGAATGTGGTATTCACCTTGCCAACAAAAACGTGCATTATCCATATAACCACGACTGTGAAGGATTTAAGATGATGAGAGCAACCGCCAGATTAAGCTGCGCCATGCCCAATTGTCACCTTTTTCATCCCAATGATTATaaagagcacatgaaagagttACATATGAAAAAAGTTTATAAATGCCCATACTGCGTCATTGCTTGTTTCAACGCAGATAGTATGCAAACCCATTTGAAGAGTCATAAAACAGAGACGAAGTCACTCGTTTTTTATAAATGCGAAATGTGTCCAGGGAAATTTATCTTGCAAAGTCGTATGGAGTGGCACTTAAAAAGTCACAAGGTCACTTGTATTTTTCCATGTTGGCCTTGCGGTTCCCTTTTCAAAGATGTAACCGTTCTACTGAGCCATTTCCTAGCAAAGCACAGTACCTGTAAAACATTAGAAAGTGCAGTGATTGGACTTCTGTCTGAAAATGATATGTTCTCGAAAGAATCAAATAAGCCGAAACGAGTATTTCGCGTTGTTAAAAGGTGTGAACAATGTAGGAGAAGTTTTATATATAGGTGTCAATATACCGATATTCACAATCTGCCTAATGAATGCCCATATAAATGTTCTTCGACTTTTTCTACGAAATTGGCTGTTGTACCTGATAGAACTCAAAGCAAAAACCATATTACGTGTCACCTTTGTAAAACAAACATATCCCAAGACtgggataaaataaaaaaacattatgctgCTCTGCACAAAACATATAAGTGTTTGGATGCTAAAATAGTTCTTACTAGaatggatttgaaaaagtaCCTAACTGGACGTAAGAAGTCGGGCATCAAAAAAAATCGTAAGAAAATATGTAGAAAAAGTAGGAGGCTGCAGCAAAATAAACCTTGCACAGTCTCTATTGGTGTTGATAATGTTCCGCTTTCTACACATGCAAGTAAACCTAAAGTTAGCGAGAGTCCATTCGTTTGCAACATGTGCGGAAATAGCtatgaacaaaaaatattattagaaaGACATATGATATCGCACAGGGATCCTTGCATGGCATATCAATGTATGGAGTGTGGACAGAGTTTTGTTGTCAAACCCTCATTTTCGAAACATTTGTTATTGGAACATAATGTATCTGATGTTGAAGAATATATTCAAGAAAAGCAATGTTACAATGAAAATGCTCTCATAAAATACCAAAGCAATGAAATTACTTCTAATGAGCCACTTCGTGAAAATCAGTGTAAAATATGTCGGAAAGACTTCGAAGGTCCAGAAGAGTTGTCAAAACATTTCAGAGTCCATGGTATGGCATTCTTAATGAAAAACAACTCGAACAGGACTGAATGA
Protein Sequence: MADSRENGEKGLFHNVFRDKTEIKRCTLGFIFESSFNDHINRKSVSITYMCRNCNLPRTFFNRCNLLVHIRSHGFKTATINLTDLILEPLPLSNYKIKPLSPPRNDLMISPVTTASEIPTAIVIPTTSEIPTSENISAQRKPKFASVHCLECKENLTTTGSPNKDRASHYMQFTNDVIFSCPICLFALPSLCAFKAHMRLHLKLPPYCCPECGIHLANKNVHYPYNHDCEGFKMMRATARLSCAMPNCHLFHPNDYKEHMKELHMKKVYKCPYCVIACFNADSMQTHLKSHKTETKSLVFYKCEMCPGKFILQSRMEWHLKSHKVTCIFPCWPCGSLFKDVTVLLSHFLAKHSTCKTLESAVIGLLSENDMFSKESNKPKRVFRVVKRCEQCRRSFIYRCQYTDIHNLPNECPYKCSSTFSTKLAVVPDRTQSKNHITCHLCKTNISQDWDKIKKHYAALHKTYKCLDAKIVLTRMDLKKYLTGRKKSGIKKNRKKICRKSRRLQQNKPCTVSIGVDNVPLSTHASKPKVSESPFVCNMCGNSYEQKILLERHMISHRDPCMAYQCMECGQSFVVKPSFSKHLLLEHNVSDVEEYIQEKQCYNENALIKYQSNEITSNEPLRENQCKICRKDFEGPEELSKHFRVHGMAFLMKNNSNRTE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526624;
90% Identity: iTF_00712438;
80% Identity: -