Basic Information

Insect: Xestia xanthographa
Gene Symbol: Gzf1
Assembly: GCA_905147715.1
Location: LR990671.1:2442376-2452360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.5e-05 0.0029 19.9 2.6 2 23 186 207 185 207 0.97

2 6 0.0018 0.36 13.3 2.9 2 22 213 233 212 235 0.87

3 6 0.015 3 10.4 0.3 2 23 242 263 241 263 0.97

4 6 5.6e-05 0.011 18.1 0.8 1 23 269 291 269 291 0.97

5 6 0.0067 1.3 11.6 0.5 2 23 298 319 297 319 0.97

6 6 0.00024 0.048 16.1 0.9 1 23 326 349 326 349 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.5e-05	0.0029	19.9	2.6	2	23	186	207	185	207	0.97
2	6	0.0018	0.36	13.3	2.9	2	22	213	233	212	235	0.87
3	6	0.015	3	10.4	0.3	2	23	242	263	241	263	0.97
4	6	5.6e-05	0.011	18.1	0.8	1	23	269	291	269	291	0.97
5	6	0.0067	1.3	11.6	0.5	2	23	298	319	297	319	0.97
6	6	0.00024	0.048	16.1	0.9	1	23	326	349	326	349	0.97

Sequence Information

Coding Sequence: ATGGATCCTTGGAACTGCTGCAGAGCATGCCTGGGGGTGGAATTTTTGTATCCTATATTTCAGTCTAAAGAACATCACGAAAAGTATACTGATGTAATTTTTTTGGCTACTGGGCTAAAGGTGGACTGTAACGATACCTTACCCCAAAAAATGTGCACATCATGCATAAACTTCATCAATTTCTCATGtagatttagaaaaaaatgtgaaGAAACCCAGAAATTCTTTCTGAGGCCCCGTACTGACAAACCAatgtacaatattaaaatagaaTCAAATATATTCAACACTGAAAACAATTCTGACATAGCAATAGACATATCAGACCTTATTAACGACGATGACAGTTTAAACAATTATAACTACGATTCTAATGAAAACGATGACAATGAAGAAATAGAATTTGAAGCAAAAGTACAAGATCTCGTTGACAAACCTGtggaattaatatttaaaagtaaaaagaatTTAAAAGGTAACGAAAAGCCGGTAAAACGGATTTTGCGAAGAAAAAAGGAGAGTGAAGACACAAATGTAAGACTGAAGGAAGAGATTCAATGTGAATATTGCCATAAGATATTAACCTCTAAGTCATCGTTAAGAAATCATTACAAAATACATACGGGATTCGATGTTGTTTGTGAACACTGTGGCAAGAAATTCATAACCAGAAGATTGTTACTGATGCACTGCCGAGCCAAGCACGGTTATGAGAAGACTGACAAGTGTTCCTTCTGTGATTACAGAGCTTCTAATGCAGAGCAGGTGAAGATTCACGAGCGACTCCACACCGGTGAGAAGCCGTACGTCTGCTCAGAGTGTGGCACGGGCTTCCATCGCAAGAGCAGCTATCTGCAGCACGTGGCCATTCACTTGCCGGATAAGAATGTGCAGTGCGACCAGTGCCCCGCTCGCTTCAAGTCCGTCACTCTGATGAGAATTCACAAGAACAGACACAAGACACCGCAGTACTCGTTCAAGTGTCGCGTCTGCGAGAACACGTTCGCGCGGCGCCGCAACGTTGTGCGGCATCTGATGCGGATACACGCCGTCCAGGCCGCACCGCATCATATAGACAGAATGAAGATACCGTAG
Protein Sequence: MDPWNCCRACLGVEFLYPIFQSKEHHEKYTDVIFLATGLKVDCNDTLPQKMCTSCINFINFSCRFRKKCEETQKFFLRPRTDKPMYNIKIESNIFNTENNSDIAIDISDLINDDDSLNNYNYDSNENDDNEEIEFEAKVQDLVDKPVELIFKSKKNLKGNEKPVKRILRRKKESEDTNVRLKEEIQCEYCHKILTSKSSLRNHYKIHTGFDVVCEHCGKKFITRRLLLMHCRAKHGYEKTDKCSFCDYRASNAEQVKIHERLHTGEKPYVCSECGTGFHRKSSYLQHVAIHLPDKNVQCDQCPARFKSVTLMRIHKNRHKTPQYSFKCRVCENTFARRRNVVRHLMRIHAVQAAPHHIDRMKIP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01285966;
90% Identity: iTF_01534327;
80% Identity: -