Xxan039572.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990656.1:22642502-22653374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.074 15 8.3 1.1 1 22 198 219 198 219 0.96 2 10 0.17 33 7.2 1.4 1 23 272 294 272 294 0.97 3 10 0.027 5.3 9.7 3.1 2 23 360 381 360 381 0.97 4 10 0.0065 1.3 11.6 3.0 1 23 386 408 386 408 0.96 5 10 7.7e-06 0.0015 20.8 0.4 3 23 416 437 415 437 0.95 6 10 0.00062 0.12 14.8 1.5 2 21 445 464 444 465 0.94 7 10 0.00081 0.16 14.4 1.3 2 23 473 494 472 494 0.96 8 10 2.8e-05 0.0056 19.0 1.8 3 23 502 522 500 522 0.97 9 10 0.00031 0.061 15.8 1.4 2 23 528 549 528 549 0.95 10 10 0.12 23 7.6 0.9 1 23 555 580 555 580 0.93
Sequence Information
- Coding Sequence
- ATGATGTCTGTAATTAACAAAAAAGAAACCAAAATGAAAATACGTGCGTGTCGAATATGTCTTGACACAAATAGTGTTGAAATGGTCTTAATAGAAGAGCAAAATGGATGGTTGAAACTGTTCGAATATTGTTTTGGAATTACTttgATCGCCCAAGATGAACCGCGTTTGCTTTGTCAAATATGTGCTGAAAAGGTCCAAAATTATGTTAAGTTTAAAGAAAAGTGTGAGAAATCTCATAGTCTTTGGAAATCTGTGATTTCTAATGTGaaatgtAATGTTGTAAAACATCTACCAGAAGTCAGTGAAGATACCAAAATAAATGCCAATGATGAAATTAAAGAAGAAATATTTGATCCAATAATAGACGGTGATATAAATTTTACTGACGATTATGGAAATGAAATCGATGATCTGTTACATATGGACATTAAAAAAGAGCCTCAAGATGATGAAACCAAATCCTGGAATGACGAAAGTAGCAAAACTGAAATGAAGGATTGTGTTGTTGGAATCGACGTTAATTCAAATCAGAATGAATCCAAAATAATTGACAATAATGACAGTGTAAAAAATGAGAAAGAAAAAGTTTACACTTGTAGAATATGCAAACAATATTATGGGAAAAAAGGATGGTATCTCAAACACATTAAGAAATGTCAAAAAAGAAAAGTACCTGAACAGCGGTTCATTTGTCAAGACTATGCTTATGACTTGGgaAGACAATACAGTGGCCAAAGTATCACTAAAGTTAAGTACGTGTCAAaaagcgaaattcaaattattgAAAACCAAAATCAATGTGCCGCTTTATATTCATGTGGTCTCTGTAATCTCAATTTCGACAAAACTAAGGACGTTTGCATACATTTGAATGATCATTGGTCCAATAATGACTTAGCGTGCAAGTTGTGTGATTTCGTTGGCGTTGACCTGGCTGCTACGGCTGCGCATAGgtATTCACACTTTCCGCGCAGAAATATGCGTTTCTTGTGCCACATTTGCGAAAAGTTCCATCTATCGCTAATAGCATTGCACTTTCACTATCGCAAGGAACATTTGAAGAAGCCTGGAGGCTATTGCTCGTGGTGCAATAAAGAATACGAGCACTTGCGTTTCTGGAAGAAACATGAGAGGACTCACTATCCTCCAAAGCATATTTGTGATATGTGTGGAAAAGGGTTTCATTTTAAGCACGCTATTAGAGCACACATTATAAATCATATGCAGTTAGATATGGGCATTTGTGACATTTGTGGAAAAACTTTCGCTCGCCTTCGTAATTTGAAGGACCACAAAATAAAAGTACATGATACTAAATCAAGACCAGTAAAATGTACCCATTGTAACCGAATGTACAAGAACGAGTTCACACTAAGAATACATCAGAATATGATTAAAAAAGAGAAAACTTTGAAATGTGAGGTATGCCAAAAGTGCTTTCTTACTCCAAAACTCTTGAAGTTGCATATGGTGGTGCATAGTAAGGAAAGACCCTATGGCTGTGATTATTGCGGAATCAGTTACAAATATAAATCTCATTTGACATATCACCTGCTGAAGCACGGTGGGTTTTTGCCGCAATGCCAGATCTGTATGAAGTCCTTCTCGAATTCGAGGTCATTAAAAAGGCATTCTGCAGTCCATACGGGAGTTCGACAGTACAGTTGCGTCGTCTCCAACTGCGTCAGGAGTTTTTACACGAAGAAACTTATGTTGGAACACTTGAAGTTACggcacaaaaatgaaaatgtcggAGAAAATATAGAGATTACAAATGGAGATATTGTAAAAAACTTTAGTTGGTAA
- Protein Sequence
- MMSVINKKETKMKIRACRICLDTNSVEMVLIEEQNGWLKLFEYCFGITLIAQDEPRLLCQICAEKVQNYVKFKEKCEKSHSLWKSVISNVKCNVVKHLPEVSEDTKINANDEIKEEIFDPIIDGDINFTDDYGNEIDDLLHMDIKKEPQDDETKSWNDESSKTEMKDCVVGIDVNSNQNESKIIDNNDSVKNEKEKVYTCRICKQYYGKKGWYLKHIKKCQKRKVPEQRFICQDYAYDLGRQYSGQSITKVKYVSKSEIQIIENQNQCAALYSCGLCNLNFDKTKDVCIHLNDHWSNNDLACKLCDFVGVDLAATAAHRYSHFPRRNMRFLCHICEKFHLSLIALHFHYRKEHLKKPGGYCSWCNKEYEHLRFWKKHERTHYPPKHICDMCGKGFHFKHAIRAHIINHMQLDMGICDICGKTFARLRNLKDHKIKVHDTKSRPVKCTHCNRMYKNEFTLRIHQNMIKKEKTLKCEVCQKCFLTPKLLKLHMVVHSKERPYGCDYCGISYKYKSHLTYHLLKHGGFLPQCQICMKSFSNSRSLKRHSAVHTGVRQYSCVVSNCVRSFYTKKLMLEHLKLRHKNENVGENIEITNGDIVKNFSW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534288;
- 90% Identity
- -
- 80% Identity
- -