Basic Information

Insect: Xestia xanthographa
Gene Symbol: -
Assembly: GCA_905147715.1
Location: LR990671.1:1246578-1249642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.8 1.8e+03 1.7 0.2 2 23 17 38 16 38 0.75

2 8 0.004 0.79 12.3 2.9 1 23 44 66 44 66 0.98

3 8 6.9e-05 0.014 17.8 2.3 1 23 72 94 72 94 0.98

4 8 0.057 11 8.6 7.3 1 23 103 125 103 125 0.98

5 8 0.00017 0.034 16.6 0.6 2 23 183 204 183 204 0.97

6 8 0.0016 0.32 13.5 3.9 1 23 221 243 221 243 0.96

7 8 5.1e-07 0.0001 24.5 0.7 1 23 249 271 249 271 0.98

8 8 1.7e-07 3.5e-05 26.0 3.1 1 23 277 300 277 300 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.8	1.8e+03	1.7	0.2	2	23	17	38	16	38	0.75
2	8	0.004	0.79	12.3	2.9	1	23	44	66	44	66	0.98
3	8	6.9e-05	0.014	17.8	2.3	1	23	72	94	72	94	0.98
4	8	0.057	11	8.6	7.3	1	23	103	125	103	125	0.98
5	8	0.00017	0.034	16.6	0.6	2	23	183	204	183	204	0.97
6	8	0.0016	0.32	13.5	3.9	1	23	221	243	221	243	0.96
7	8	5.1e-07	0.0001	24.5	0.7	1	23	249	271	249	271	0.98
8	8	1.7e-07	3.5e-05	26.0	3.1	1	23	277	300	277	300	0.98

Sequence Information

Coding Sequence: ATGCTGGAGGTGCACACGCAGTCGCACGCGGGCGAGGCGCTAGTGCTGCGCTGCCACTACTGCCTGCTGCCCGCGCCGGACGAGGAAGCGCGTCGGGAGCACGAGGCCACGCACACGGGCCCCAAGCCCTACACCTGCACGCTCTGCGGGAACACCTACAAGAAGAGAGAGACCATGGTGTACCACCGCAAGAGGCACGCGCCCGACGCGGAGTTCGTGTGCGACGTGTGCTCCAAGCGGTTCAGCGCCGCCTGCAAGCTGCGCAAGCACTTGCTCACGCACGCGCGCGACGCCTTCGTGCTGCGCTACGAGTGTCCCGTGTGCGCGCACATGTTCCACACCAAGTACCACGTGCACATGCACCTCAGCACGCACCAGAAGGAGGGCCTGATCTTAGAGGAGAATCGAAGCGAGATCCTCGCCATGGTACTCCAGAACGCGCGCAAGATACCGCGCGCCGGCACCGCACAGAACACGCAGCTAGCGCACACCGCGCAGGCGCAGCCCGCCAACACACCCGCGCTGCCGCCCGACGAGCGGTCGCGCGTCTGCAACATCTGCGGAGACGTCTTCTCACACTTTTACTACTTAGAAGAGCATCTCAAGAGCCACGGCTCCAGAATAAGCATCGAAGACATCGACAAGCAAGAAGAGAAGAAGTACATCTGCACGATATGCAACAAGGGGTTCAAGTTGCACTACTATCTGAAGCTCCACAGCTTCACGCACTCCAAGGAGAAGCCGTTCATCTGCCAGCAGTGCGGGAAGGGGTTCATTACGAAAGGGAAGCTGAAGCGGCATCTGGAGACACATACCGGCCTGAAGAAGTACCAGTGTCACATCTGTTACAAGTTCTTCACGAGGCCGAGCTACCTCCGGATACACGTCAGGACTATACACGGTACGCAGGACTACAACTTCCGGTTCGACAAGGGCTACGGGCTGGGCTCATTCGCCATGTCCATGTCCGTGTCGGATGTCAGCCAGAATAGTGTTTAG
Protein Sequence: MLEVHTQSHAGEALVLRCHYCLLPAPDEEARREHEATHTGPKPYTCTLCGNTYKKRETMVYHRKRHAPDAEFVCDVCSKRFSAACKLRKHLLTHARDAFVLRYECPVCAHMFHTKYHVHMHLSTHQKEGLILEENRSEILAMVLQNARKIPRAGTAQNTQLAHTAQAQPANTPALPPDERSRVCNICGDVFSHFYYLEEHLKSHGSRISIEDIDKQEEKKYICTICNKGFKLHYYLKLHSFTHSKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRFDKGYGLGSFAMSMSVSDVSQNSV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00712329;
90% Identity: iTF_01062234; iTF_00685829;
80% Identity: -