Basic Information

Insect: Xestia xanthographa
Gene Symbol: -
Assembly: GCA_905147715.1
Location: LR990664.1:8678188-8679336[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.029 5.7 9.6 4.2 1 23 160 184 160 184 0.92

2 7 0.055 11 8.7 0.3 2 23 190 210 189 210 0.92

3 7 3.7e-06 0.00073 21.8 1.3 1 23 216 238 216 238 0.98

4 7 8.4e-05 0.017 17.5 1.7 1 23 244 266 244 266 0.99

5 7 9.9e-06 0.002 20.5 0.7 1 23 272 294 272 294 0.97

6 7 6.8e-06 0.0014 21.0 0.9 1 23 300 323 300 323 0.97

7 7 1.8e-05 0.0035 19.7 1.5 1 23 329 352 329 352 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.029	5.7	9.6	4.2	1	23	160	184	160	184	0.92
2	7	0.055	11	8.7	0.3	2	23	190	210	189	210	0.92
3	7	3.7e-06	0.00073	21.8	1.3	1	23	216	238	216	238	0.98
4	7	8.4e-05	0.017	17.5	1.7	1	23	244	266	244	266	0.99
5	7	9.9e-06	0.002	20.5	0.7	1	23	272	294	272	294	0.97
6	7	6.8e-06	0.0014	21.0	0.9	1	23	300	323	300	323	0.97
7	7	1.8e-05	0.0035	19.7	1.5	1	23	329	352	329	352	0.96

Sequence Information

Coding Sequence: atgtcGCTGTCTATGTTACTGCTAAAAATGTTACATTGCAAACAGATGAATGGCAGAAGTACCAGCGCAGGGGAGGACTCAGCCGGCAGCATATCACTCAACGAAAACTCACGAGGGAAAACAAGCATAAAGAAGGAACAGAACGACGAAAACGTATGCAGGGTTTGCCTCAAAGAAGGTTGCATACCAATCTATGGGAACAACACAGCACAAGACCTTTCCGAATCTTTTAACACATTTGCCGGCGTAGAAGTAAGAATAGATGACCCGTATCCTAAGTACTTATGTGAGCCATGTAACACTCTTCTTCAAGGAGCAATCCTATTTAGGAAAACTGCACGACAGTCAGATGAAATTCTAAAACAGCCTCCTGAAGACTTGCAAGctactgataatgatgatacatTCGATTACCctgaggacgacgacgacaactcTTCAGAATATGAAGAATGCAAAAGCAGTATTAAGAGGTCATATCATTGTAAAAAGTGCGAATTGTCATTTGACTCATTCAGTGACTACCATGATCACAGATTGACAGACGAACATGAGAATAGGAAAATTGTGTGTCCTGTATGCAACAAGTTGTACTCACAATTGTATTTCAAAAGGCATTTAGCATTACATAAAGAGAAGGCTTTATACATGTGTGATATTTGTGGGAAAAACTTTATAATGCAGGGACACTTTGCACGCCACCGTCTAACACACTTTTACAAACTACCCTTCAAATGTTCTCTTTGTCCGTACAAAGGAAGGTTCAGTGAGTCACTGAAAATGCATATGcgcacacacactggtgaaaaaccatACCAATGTGCACAATGCCCTGCCAGATTTATtagtaaaagtaatttaaacaaACACTCATTGAGACATAGGGGAGAACATGATTTTAAATGTGAGACTTGCGGGCGAGGCTTCTATACTAAACGAGAATTGGAGTTACACTATAAAGTAGATCACACAGGGCTAAAGGACCATGTTTGTAATATTTGTGGGAAAGCATTTGGTTATAGAAAGCAGATGATGAAACATCAGCTCAAAGTACATAAGAGAGCAAAACTCAGAAGTGGTAGAATGCCTTTGTATTTGCAAGTGGAAACTCTGAAGGAACGGGGCCAAGATATTTCTATTGAGAGTTGA
Protein Sequence: MSLSMLLLKMLHCKQMNGRSTSAGEDSAGSISLNENSRGKTSIKKEQNDENVCRVCLKEGCIPIYGNNTAQDLSESFNTFAGVEVRIDDPYPKYLCEPCNTLLQGAILFRKTARQSDEILKQPPEDLQATDNDDTFDYPEDDDDNSSEYEECKSSIKRSYHCKKCELSFDSFSDYHDHRLTDEHENRKIVCPVCNKLYSQLYFKRHLALHKEKALYMCDICGKNFIMQGHFARHRLTHFYKLPFKCSLCPYKGRFSESLKMHMRTHTGEKPYQCAQCPARFISKSNLNKHSLRHRGEHDFKCETCGRGFYTKRELELHYKVDHTGLKDHVCNICGKAFGYRKQMMKHQLKVHKRAKLRSGRMPLYLQVETLKERGQDISIES*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038157;
90% Identity: iTF_01062212;
80% Identity: -