Xxan033549.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- ZIPIC
- Assembly
- GCA_905147715.1
- Location
- LR990654.1:9413488-9433912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.017 3.3 10.3 1.1 1 23 249 272 249 272 0.96 2 11 0.066 13 8.4 0.9 1 23 278 300 278 300 0.96 3 11 0.11 21 7.8 6.7 1 23 304 327 304 327 0.97 4 11 0.0093 1.9 11.1 1.7 1 23 331 354 331 354 0.96 5 11 0.0002 0.039 16.4 1.9 1 23 357 380 357 380 0.98 6 11 2.6 5.1e+02 3.4 0.3 1 23 383 406 383 406 0.95 7 11 0.0071 1.4 11.5 0.3 3 23 414 435 413 435 0.93 8 11 0.00015 0.03 16.8 0.1 2 23 446 468 445 468 0.94 9 11 9.9e-07 0.0002 23.6 0.7 1 23 474 497 474 497 0.98 10 11 0.00021 0.042 16.3 0.7 3 23 508 528 507 528 0.97 11 11 0.0025 0.49 12.9 0.3 3 23 536 557 534 558 0.95
Sequence Information
- Coding Sequence
- ATGGACGAAACTGAAATAAAGTATGAATTTCCTAACTATGAGAACCAGTGCTGTGTCTGCTTTAGTGTTGGAAGAAAATTATCTCCTTTACGAGAATATATCAATGTTTTTAAAATGCTCACTTTGGACATTCAAAATCATAACCAGACTCctctaaaagaaataaaactatGTTGGGAATGTAATGCATTTCTGCGGAGAGCGAATATCTTTCAACAGCAGGTCAGGAGAGCCAATGAAATGCTTCTATTGGGACAGAATTACCTCTATGGCACTCAATCAAGTCTAACAACAATCATTTTAAATGATTTACATCCTCACACTATTTACGTAAACGATTTAAATGTAAAAGTACAGTCAGACTCAAAAACATGTGACAAGAATAGTGATGAAGATGAAATAAACGATGTATTTGATGACACTGGTGATGACTGTCCTAAAATTGAAGAAATGTCGAAAGAAACTACAGGTTCTTTTCCAGACACAAACCCTGAAAACACCAACCCAACCAGTGAAAACCATATAAAGCTCAAAAATATCACTTCTTTACAAAAATCTTCGGTAGAAAAAAAACCGAACAAAAATCGTTGGGCGAAAAAAAGAGCTTTACAAAATAAGAAGCcgaaattcaaaattatcaCGGAATATACTAAAGAATGCTTTAGAAGAGTACAGATAGATGATGAAGAGTTACGGACTATGTTGAAGAGTGAGAGAGATAGCGTATATTTTAAGTCCAAGAGGTTTAAATGCGAGAAATGTGTTTTGACGTTTTCGAGTCAAGAAATTTTGGGGAAGCATGTTAAGAAGTTTCATAGTAAGcTAACAAAATACATCTGTGATATCTGCACCTCAAGTATCCCACACAAGGGCCATCTATCGTCACACGTTAGCGAGCACTACTATAAGTTCTCGTGCACACTATGCGACTTCGCGTGTTGCGACAAATCGCAGACAAAGTGGCATCGCCAGAGGAGGCACAGGAATGTGTTTCAGTGTCTGAAGTGTGAGTTAAAGTTTGGGAGTCGTTGGGAATTCTTTAAACATTACAAGGAGTGGCACGAAAAGTTCGTCTGTGATTATTGTGGGATCAGCTTCAAGATGAGATACTGTATCGAAGATCATATCAGAAAACAGCACTCACCCTTCGAATGTAAACCGTGCAACAAGCGCTGGGCTCGCTACAACGGTCTGTGGCTTCACAACAAGACAGCACACGGCGTGCACGTGGCGGCCTACTGCGTGgagtgcgacaagcagtaccGCGACCCGTACCGCTACCGGTGGCACCTCGCCAACACACACAAGAGCAAGAGGCACATGAAACGTAGGATCCCGTGCCCTGGCTGTGACAAGGTCTTCTCAAAGAACATCTATATGAAGGACCATTACAATCTAGTGCATCTCAAGTATTACAAGTATCGATGTGAGCAATGTGATAAGAACTTCATCCGTAACGCAGACCTTGTGAAGCACACTCGGCGCGTCCACGAAGGTATACTGCCGCCCAAGAACAAAATCTGTTACATGTGTGGCAGAGGATTTTCTACCAACAAGATACTAACTAACCACTTACGAACACACACTGGAGAGAAACCTTTTGGCTGTACGATATGCAACGCTCGCTTTGCGCAGAGAACAGCTTTGTCGGCTCATGCGAGAGCTATACATCATACGCTACTGAAACagacgtaa
- Protein Sequence
- MDETEIKYEFPNYENQCCVCFSVGRKLSPLREYINVFKMLTLDIQNHNQTPLKEIKLCWECNAFLRRANIFQQQVRRANEMLLLGQNYLYGTQSSLTTIILNDLHPHTIYVNDLNVKVQSDSKTCDKNSDEDEINDVFDDTGDDCPKIEEMSKETTGSFPDTNPENTNPTSENHIKLKNITSLQKSSVEKKPNKNRWAKKRALQNKKPKFKIITEYTKECFRRVQIDDEELRTMLKSERDSVYFKSKRFKCEKCVLTFSSQEILGKHVKKFHSKLTKYICDICTSSIPHKGHLSSHVSEHYYKFSCTLCDFACCDKSQTKWHRQRRHRNVFQCLKCELKFGSRWEFFKHYKEWHEKFVCDYCGISFKMRYCIEDHIRKQHSPFECKPCNKRWARYNGLWLHNKTAHGVHVAAYCVECDKQYRDPYRYRWHLANTHKSKRHMKRRIPCPGCDKVFSKNIYMKDHYNLVHLKYYKYRCEQCDKNFIRNADLVKHTRRVHEGILPPKNKICYMCGRGFSTNKILTNHLRTHTGEKPFGCTICNARFAQRTALSAHARAIHHTLLKQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534249;
- 90% Identity
- iTF_01534249;
- 80% Identity
- -