Basic Information

Insect: Xestia xanthographa
Gene Symbol: -
Assembly: GCA_905147715.1
Location: LR990671.1:7263670-7280896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0078 1.6 11.3 1.5 1 23 250 272 250 272 0.98

2 9 0.27 55 6.5 0.2 3 23 297 318 295 318 0.95

3 9 0.011 2.1 10.9 0.2 3 23 341 361 340 361 0.97

4 9 0.0032 0.63 12.6 1.4 1 23 365 387 365 387 0.98

5 9 0.0046 0.91 12.1 0.3 1 23 394 417 394 417 0.95

6 9 7e-05 0.014 17.8 1.7 1 23 452 475 452 475 0.97

7 9 0.00015 0.03 16.7 1.4 1 23 481 503 481 503 0.98

8 9 2.9e-06 0.00058 22.1 1.0 1 23 509 531 509 531 0.99

9 9 1.9e-06 0.00038 22.7 3.6 1 23 537 559 537 560 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0078	1.6	11.3	1.5	1	23	250	272	250	272	0.98
2	9	0.27	55	6.5	0.2	3	23	297	318	295	318	0.95
3	9	0.011	2.1	10.9	0.2	3	23	341	361	340	361	0.97
4	9	0.0032	0.63	12.6	1.4	1	23	365	387	365	387	0.98
5	9	0.0046	0.91	12.1	0.3	1	23	394	417	394	417	0.95
6	9	7e-05	0.014	17.8	1.7	1	23	452	475	452	475	0.97
7	9	0.00015	0.03	16.7	1.4	1	23	481	503	481	503	0.98
8	9	2.9e-06	0.00058	22.1	1.0	1	23	509	531	509	531	0.99
9	9	1.9e-06	0.00038	22.7	3.6	1	23	537	559	537	560	0.96

Sequence Information

Coding Sequence: ATGGAGACTTCGGTGACTCCTGTGAAAGGCAAAGGCCCGATCATAGACCCTGCATTGTGCCGCTGCTGTAGATCTATAAAAAAATGCCGTCTTTTAACAACCGAATATGAATGGATGGACAACAAAAAAGAAGTGTATTCTGAAATGTTTATGGACTGTTTCGGTCTGcttTTACCACACTTAGATGGAGACGCCAAAGATTGCTGTGTTTGTGCAACTTGCGTGGTACGTCTGCGTGATGCGTGTGCGTTCAAACAACAGGTGTTGCAGTCCCAAGAGGCTTTCCTAAGCAGCAGGCTGCATCTTAAAGAAGGCGGACCTGGTAAGGTAGAAGTAAAGATGGAACCGGTCTCTGATGACGATTCGGATGCCATGGACAACGCGGATGACCTAGCAAATGATGACATTTCAGATGCCTTAGACACTTCTCTAGACGATGTGAAAGACATCAAACTGTCAGACGAAGCGCCAGTGTCGGGCCGGACTCGCGCCAAACGAGTGAAAAGCGAGCGCAGCATCAAGCGAGAGATTACTGTCAAGATGAAGAAGTTACGCGCCAAACTTGATGATATGTTGGAGAAGCCTATAGTTGCAGAACTTGCAGACGAAGTCCCAGTAAAAACAGAACCACAGCAGAAAATCAAGATTAAAAAACCGGAACTAGACCACGATTTCATGGTGTACACGAACGCTCTAACAATAGTAAAAAATTCCTACGTCTGTCCTTTTCAAAACCGAATCAGTATATACTACTGTTTCTATTGCCGGGACCAATTCACGAATCCCAACGAATTGAGGGAACATACCCTCTCCCATGACCCCGTAGAACTCTTTCAAAATACAATGGAAAACCGTAAAATACCGAAAATAGACATCACTAGAATCGATTGTAGACTCTGTAACGAAAAAATCGATGACTTAGAAATGTTTAAGAAACACATCTCTAGCGTTCACGGTAAAAGTCTATATCCGGTCTCTAACGAATTCTTGAAATTTAAATTGACAATGGATAATTTACTTTGTACTGAATGTAATTTGGGTTTCCcttattttgatgtacttaaAAAGCATATGATAGATCATTTCGGGACGTATATATGCGATCAATGTGGAGCTTGCTTTCTCGAACGCAACTCGTTAAGAACTCACATAAAATCTCACAGCAAAGTCGATGAGAGTTTCCCTTGTGAAATATGTGGAAAGAACTTGAAATCTAaatacagtaggtacctacatgtggCTACAGTTCATGAGAAAAAAGCTACAGTGAATTGTTATAAATGTGAAGCAAGTTTTCTATCCTACGCTTTAAGAAACCGCCATTTAATAGAAGTTCACGGTGATAAACGGACGTTTCCTTGTAAATTGTGCGATAAAGTCTATAACAGGCGAAAAACTTTAATGGAACATAATCGCAGAAATCATTTAAAAGTCTATAGACACCAATGCGATTTATGTGATCAAAGATTTTATCTACCTTCGCGATTAAAAGAGCAtatggcaacacacactggtgaacGGAATTTTCGATGCGAATTTTGTGATAAAAGTTACCCCCGATTACAATCTCTACAAGAACATATACGGTCTCACAGTAATGAGAGACGatttaaatgtgatatttgcaATTCTACGTTTACTCAAAATGGTAGCTTAAAAAATCATATGAAATCCCACCATCAAGGATATGATTTGGATCCCAATTATAGTTGA
Protein Sequence: METSVTPVKGKGPIIDPALCRCCRSIKKCRLLTTEYEWMDNKKEVYSEMFMDCFGLLLPHLDGDAKDCCVCATCVVRLRDACAFKQQVLQSQEAFLSSRLHLKEGGPGKVEVKMEPVSDDDSDAMDNADDLANDDISDALDTSLDDVKDIKLSDEAPVSGRTRAKRVKSERSIKREITVKMKKLRAKLDDMLEKPIVAELADEVPVKTEPQQKIKIKKPELDHDFMVYTNALTIVKNSYVCPFQNRISIYYCFYCRDQFTNPNELREHTLSHDPVELFQNTMENRKIPKIDITRIDCRLCNEKIDDLEMFKKHISSVHGKSLYPVSNEFLKFKLTMDNLLCTECNLGFPYFDVLKKHMIDHFGTYICDQCGACFLERNSLRTHIKSHSKVDESFPCEICGKNLKSKYSRYLHVATVHEKKATVNCYKCEASFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHIRSHSNERRFKCDICNSTFTQNGSLKNHMKSHHQGYDLDPNYS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01285860;
90% Identity: iTF_01085721;
80% Identity: -