Xxan066217.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990671.1:8578977-8588816[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.024 4.8 9.8 0.5 1 21 65 85 65 86 0.95 2 22 0.54 1.1e+02 5.6 0.5 1 23 93 116 93 116 0.91 3 22 8e-05 0.016 17.6 1.6 2 23 123 145 122 145 0.96 4 22 8.4 1.7e+03 1.8 3.4 1 23 154 176 154 176 0.93 5 22 0.0034 0.68 12.5 3.8 3 23 184 204 182 204 0.96 6 22 0.19 37 7.0 0.1 2 15 211 224 210 226 0.90 7 22 0.011 2.1 10.9 0.9 1 23 296 319 296 319 0.95 8 22 0.0067 1.3 11.6 0.3 1 23 419 441 419 441 0.97 9 22 0.31 62 6.3 1.3 1 23 446 468 446 468 0.95 10 22 0.083 16 8.1 2.3 2 23 476 498 475 498 0.96 11 22 0.00058 0.12 14.9 1.8 1 23 505 528 505 528 0.96 12 22 6e-05 0.012 18.0 5.7 1 23 534 556 534 556 0.98 13 22 3.5e-06 0.00069 21.9 2.0 1 23 562 584 562 584 0.99 14 22 0.0036 0.72 12.4 1.7 1 23 664 687 664 687 0.97 15 22 5.4 1.1e+03 2.4 4.0 2 23 759 782 758 782 0.86 16 22 0.049 9.7 8.8 0.0 1 23 786 808 786 808 0.92 17 22 2.3 4.5e+02 3.6 2.7 1 23 813 836 813 836 0.92 18 22 0.24 47 6.7 2.2 2 23 844 866 843 866 0.95 19 22 0.0016 0.33 13.5 1.0 1 23 873 896 873 896 0.97 20 22 5.5e-05 0.011 18.1 1.3 1 23 902 924 902 924 0.98 21 22 1.7e-05 0.0034 19.7 3.2 1 23 930 952 930 952 0.99 22 22 7.9e-07 0.00016 23.9 0.5 1 23 957 980 957 980 0.97
Sequence Information
- Coding Sequence
- ATGATAGTGGTTTTCAAAACTATAGACCCCGATCAATTGCCGGTTTTTGTCGCCTACGAGCTACATAAACTGCCCCCTGTGTGTTTCGACCACGTAGACGTCACGAAAATACTAAAAGACCTGTTAACTTTGCACCGGAGCGGGCAGCCCAGATTTTTAAAAGACGATGACTACAAAAAAGTCGGCGACTCATACCAATGCACGAGATGTGAGAAGAAATACTCCAAAATAGACTCCATAAAGTGGCATCTTAAGGAGAAAAATTATCACAAGGAACACAAATGCTCATATTGTACTGATGGATTCGGGACACTTCAGCTGTTAACCATTCATGAGCTGGAAGTGCACAATGTTGACCACAGAGTCACCTGCAGTTTGTGCGACAGAAAATACGTCACAAAAAAGCAGTTAAACCTACACATGAACAAATTCCATCTCCTCGGTGAAATCGGACGGAGGTACAAGTGCGAATTATGTGATTTTGTGGCTATGAATTGCGTAAAATTCTACAAACATAAGTTTATCCATAAGACGGAGAAGGATCAGCATTGTCGTTTTTGTAGCAAGTCGTTTAAGAGGAGGGCGACGTTGCTATTGCACGAGAGAATTCATACTGGCGATCGAAGAAGCGTTTGCTCTGAATGTGGACAGGCGTTTGTGCAAAAAGCGAATAAACAACCAGAACTGGCTACAGCTACGAACATCAAAATAGAGCCGAAAACTGAAAAAATAGTAGAAATACCCAAAGAagaaaatatacaaataaaacCTGACTCAGTACCTAAACCACGCATAAAGCGACTACTACACAAGCATCTCCACAATCTGAAAATAATCCTAGAATCTACGAATGCGACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAGccaatgaatttgaaagtaCATACTTTAACGGAACACCAAAATGAAGACAAATTCTATGGCAACATAAAAGCCAAAGGACCAGCTAGGTTCTTAGTCAAATTGGACATCACGAACCTAAAATGCATGCTTTGCAACAACAACATAGATTCTCTCGGAGATATATTCGTTCATCTCACAGAGAAACATGATAAGACCTTCCATACTGATATACAAAATCAAATATTTCCCTTCAAATTCAATACGAAACAAATGAAATGCTGTCAATGTACTAGTGACGTCATCTTCGCCACGTTTAGTGCATTACATGAGCATATGCATCAACACTACAGATACTTCGTTTGTGACGTCTGTGAAGCTGGATTCGTCAATCATGATACTTTATCCAGCCATAAAGTCACCCACACGAAAGGAACTTTTGCCTGCCGACATTGTCCGGTCGTATTCGACAACGTTTACAAGAGAAGAAATCACGAAATCCGCCATAGTAAGGCTGGCAAATTAAACAAATGCCATTTCTgcaatgaattttttaaagaTTATAATACGAAGGAAATACATCTTGCTACAGTACATGGCATTGCTCCAGCGAAACACAACTGCACTGCTTGTGACAGGAGCTTTCCTTCTAATAGTTTCCTTAGCGCACATGTCAGACGGTTCCACTTGATGGAGAAGACCCACAAGTGTTCAGAGTGCGACAGAGCGTTCTTCAGAGAAAGCCATCTAAAGAAACATACGCTGAGTCATACAGGGGCTAAAAATTTCAAGTGTGAAGTCTGTTCAAAGCAGTTTACTACTAAATCTATTCTGACTCGGCATATGAGAATTCATAACAATGATAGGCGCTTTAAATGTACAATTTATATACAAGAAAAAGTGGCTACAGCTACGTACATCAAAAAAGTGCCGACAGTGGTACCTATCGAAGAGAGCAATACACTAATAAAACCTGAGGCGGCACCTCGAACACGCATAAAGCTGCTAAAGCTACACAAGCAACTCCAAAATCTGAAACGAATCCTAGAATTTACAAATGCAACGATGATACTTAAGCATGGAGATAAAGGATATATGTGTTGCTATTGCACGGAAGCTTTCGAAGAACCCATACATTTGAAAGTGCATACTTTAACCGAACATCAAAATGAAGACAAGTTCTATGGCAATATCATAACTTCACAAGCTAGGTTCTTAGTCAAACTTGACATAACGAAGCTAAAATGTATGATTTGCAGCGCCAACATAGATTCTCTCGATGATATATTCGTACATCTTACAgagaaacataataaaaacttcCATACTGATATTCAAAATCAAATATTTCCTTTCAAGTTCAATAAGAAGCAACTGAAATGCTGCTTATGTACGAGCGATGTCACTTTTGCCACGTTTAGATCATTACAAGAGCATATGCACAAACACTACAGATACTTCATTTGTGACGTGTGTGACGCTGGTTTCATCAATCCTCTGTCGCTCTCCAATCATAGCGTCATTCACACGACAGGAACCTTCGACTGCCGACATTGTCCTGCCACATTCGACAACGTGTTCAAGAGAAGAAGCCACGAAAATCGCAGCCATACGCAAAATGGCAAATTGAATAAATGCCATTTATGCAACGAGCGTTTTAAAGAGTATTTTGAGAAGGAGTTGCATCTATCTACAGCTCATGGTGCtactaaaaaaatgtataaCTGCACCGCGTGTGACAGAAGTTTTACTACCCAAACTATCCTTAGAATACATGTTAGGAGCTTTCATCTGATGGAGAAAAATCACAAATGTTCTGAGTGTAATAAAGGTTTCTTCAGAGTCGGCGGCCTAAAGAACCATATGCTGGTTCATACAGGGGCTAAAGATTTTCAATGTGACGTCTGTTCCAAGCATTATGCTAAGAAATCTACTTTGAACCAACATATGAAGATTCATTACGATAAGCGTTATAAATGTACAATATGTGACAGAGAGTTTGTACAGAAACCTAGCTTGAAATGGCATATGAGAGCGAAGCACTCAGACTGA
- Protein Sequence
- MIVVFKTIDPDQLPVFVAYELHKLPPVCFDHVDVTKILKDLLTLHRSGQPRFLKDDDYKKVGDSYQCTRCEKKYSKIDSIKWHLKEKNYHKEHKCSYCTDGFGTLQLLTIHELEVHNVDHRVTCSLCDRKYVTKKQLNLHMNKFHLLGEIGRRYKCELCDFVAMNCVKFYKHKFIHKTEKDQHCRFCSKSFKRRATLLLHERIHTGDRRSVCSECGQAFVQKANKQPELATATNIKIEPKTEKIVEIPKEENIQIKPDSVPKPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEAFQEPMNLKVHTLTEHQNEDKFYGNIKAKGPARFLVKLDITNLKCMLCNNNIDSLGDIFVHLTEKHDKTFHTDIQNQIFPFKFNTKQMKCCQCTSDVIFATFSALHEHMHQHYRYFVCDVCEAGFVNHDTLSSHKVTHTKGTFACRHCPVVFDNVYKRRNHEIRHSKAGKLNKCHFCNEFFKDYNTKEIHLATVHGIAPAKHNCTACDRSFPSNSFLSAHVRRFHLMEKTHKCSECDRAFFRESHLKKHTLSHTGAKNFKCEVCSKQFTTKSILTRHMRIHNNDRRFKCTIYIQEKVATATYIKKVPTVVPIEESNTLIKPEAAPRTRIKLLKLHKQLQNLKRILEFTNATMILKHGDKGYMCCYCTEAFEEPIHLKVHTLTEHQNEDKFYGNIITSQARFLVKLDITKLKCMICSANIDSLDDIFVHLTEKHNKNFHTDIQNQIFPFKFNKKQLKCCLCTSDVTFATFRSLQEHMHKHYRYFICDVCDAGFINPLSLSNHSVIHTTGTFDCRHCPATFDNVFKRRSHENRSHTQNGKLNKCHLCNERFKEYFEKELHLSTAHGATKKMYNCTACDRSFTTQTILRIHVRSFHLMEKNHKCSECNKGFFRVGGLKNHMLVHTGAKDFQCDVCSKHYAKKSTLNQHMKIHYDKRYKCTICDREFVQKPSLKWHMRAKHSD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -