Basic Information

Insect: Xestia xanthographa
Gene Symbol: ham
Assembly: GCA_905147715.1
Location: LR990660.1:19208834-19215477[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00082 0.16 14.4 0.8 1 23 84 107 84 107 0.93

2 8 1.7e-08 3.5e-06 29.1 0.1 1 23 113 136 113 136 0.96

3 8 1.5e-06 0.0003 23.1 1.7 1 23 142 164 142 164 0.95

4 8 5.3e-05 0.011 18.2 6.1 1 23 170 192 170 192 0.99

5 8 0.00016 0.032 16.7 0.3 2 21 200 219 199 220 0.94

6 8 1.3e-08 2.5e-06 29.6 0.7 1 23 617 639 617 639 0.98

7 8 4.6e-07 9.1e-05 24.7 1.7 1 23 645 668 645 668 0.97

8 8 1.7e-05 0.0034 19.7 3.2 1 23 674 696 674 696 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00082	0.16	14.4	0.8	1	23	84	107	84	107	0.93
2	8	1.7e-08	3.5e-06	29.1	0.1	1	23	113	136	113	136	0.96
3	8	1.5e-06	0.0003	23.1	1.7	1	23	142	164	142	164	0.95
4	8	5.3e-05	0.011	18.2	6.1	1	23	170	192	170	192	0.99
5	8	0.00016	0.032	16.7	0.3	2	21	200	219	199	220	0.94
6	8	1.3e-08	2.5e-06	29.6	0.7	1	23	617	639	617	639	0.98
7	8	4.6e-07	9.1e-05	24.7	1.7	1	23	645	668	645	668	0.97
8	8	1.7e-05	0.0034	19.7	3.2	1	23	674	696	674	696	0.98

Sequence Information

Coding Sequence: ATGTTCTCCAGCGTGGCACAACATCGCGCGACGTTGCCAGCTGGCGCGCAACATGACAAAACAAAGCAAAAGTTGCGAAACAAAAGTTCCGCGCTGACTTTCAACACGTTGAGCAACATGCTGAGCAACATGTCGTGCGCCAAATGTTGCCTAGTGGATACGAGGCTTAagacgctcagcagtcgcgcttcgTCGCAACTCAGTCTCGATCGTCACTTGATAACGGAGCACGCCCAGCCGGCCGCTGCATTTCACTGCGAACTTTGTAACCGAGCTTACAGCACTCGAGTATTGCTCCTGCGACACCGTGCCCTTGCGCATACAGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCTCAGCACGCGGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTGAAGCAGCACACGCACATACACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTTTGCTTTAAGGCTTACACCCAGTTCTCTAATCTCTGCCGGCACAAGCGGATGCACGTCGCTTGCAGAGCGCTCGTTGAATGTGCAAAATGTGGGCAGTCCTTCACGTCTTACGCCTCTCTTACTAAGCACAAGAGATTCTGTGACACCGCTGCAGCAGCTTCCGTTAACCTGCGAGGACAAATGCCCCAGGGCCTATCGCAAATACCATCACTACAAAACGTCGGGATGAATAACCCAAACAACAGCAACCCGTTCCCAATGTACAGGGGACCTACTCTGCCCCTGCCATACAACACGTTTGCCCACTACCCGGCGCTATTCTCTGCCGCCGCTGCTGCTGCCTGCCCACCTGAGTTCCTCAGCCCATTGCTGTTCAACGTACAAGGAGCAAGACTTGCTATGGAACATGATATGGCCATGTCAAACGCCAACTTAGTTTCAAAGCAGCAAGAAGGCCGCCTATCAGTTAAAAGTATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGTCTAAGGATTTGGATTTCGAAAACAAAAGAGACAGCTACAGTTCAGATAGGGCTACGCCCAACAAATCACATAGTCTTTATTCAAAGCAATCGCCTCCTTCTGGAGAAGAAGCCTCGTCTCAACGCCGACCATCACCAGTCATGCCACTGCCTACACCGATTGCTCCATTCAGTTTCGCAAGAGATGAAATGAAGAGGAAGTCACCGTACAACTTCTCTCTCAAGCTCAATAATAATGACATTCAGGTTAACAAGAGTCTGTCACCACTACCCAAAGACTTGTCCAAGAATGTTATCGAAGACGATAAAATGTCTGAGTATTCTGATGTTGAAGAAGATACAAAGAAAGACGAAGGTGACCAGCCTTTAGATCTATCGGTGTCAAGGAAACAGAACGATAAGGATTCTGAAGCAGAGAATGACGATCGTTCCTTCCGCAACTCAGTCAAATCTTATTCACCTCCTGAAAGCCCAGCCGAGAGGAGCAAGACTCCTGAAAATGACACAACAGACGTCGATGTTGAAGGCGTAGAACCTAAAAGGGAGGAATCACCACCGCAGCTAGTATCACCACCTCTCGCTTTCCCTATGCCCGTTCACCCGCAGCACAGCAACTTGATCGATGCCATGTACCGGCCTCGATTCCCATCGTTCCACACTTCTGAATCGCTTCTGAACTCGTCACACTCTCCTTATGTTCCGAGTCCTTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCTGACAGGCAATCAAGCGCGTATGCCAAGTTTCAAGAGCTTAGTTCAGGATCAGGAAAGCTTCGTGACCGGTACGCTTGTAAGTTCTGCGGGAAGGTGTTCCCGCGAAGTGCGAACCTGACTCGTCACCTACGTACACACACTGGCGAGCAACCTTACAAGTGCAAGTACTGCGAGCGCTCGTTCTCGATCTCGTCAAACCTTCAGCGGCACGTGAGGAACATTCACAACAAGGAGCGGCCATTTCGGTGTCCCTTGTGCGAAAGATGTTTCGGGCAGCAGACGAATCTCGATCGTCACTTGAAGAAGCATGAGGCGGAAGGTGGAGATTCTCCAAGCTCTGCGGATACTGAGAGGGAAGATGCGTATTTCGATGATATTCGGTCGTTCATGGGTAAGGTGACGTGTTCCCCAGGCGCGCGTTCCCCGGCGGCCACGCCCCCGCACGGCGCGCACGGGGCGCACGGGGCGCACGGGACCCACAGCGCGCATGGGGCACACGCCGCGCACGGCCCGCGCCCCTCGCTCGCTATCTCCACATAG
Protein Sequence: MFSSVAQHRATLPAGAQHDKTKQKLRNKSSALTFNTLSNMLSNMSCAKCCLVDTRLKTLSSRASSQLSLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECAKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLSQIPSLQNVGMNNPNNSNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKSKDLDFENKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVMPLPTPIAPFSFARDEMKRKSPYNFSLKLNNNDIQVNKSLSPLPKDLSKNVIEDDKMSEYSDVEEDTKKDEGDQPLDLSVSRKQNDKDSEAENDDRSFRNSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQSSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGAHGAHGAHGTHSAHGAHAAHGPRPSLAIST*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449488;
90% Identity: iTF_00449488;
80% Identity: -