Xxan047312.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia xanthographa
Gene Symbol
-
Assembly
GCA_905147715.1
Location
LR990660.1:17948104-17960748[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00012 0.024 17.0 0.1 3 23 135 155 134 155 0.97
2 18 1.1e-06 0.00022 23.5 1.2 1 23 161 183 161 183 0.99
3 18 6.8e-06 0.0014 21.0 2.7 1 23 189 211 189 211 0.99
4 18 6.3e-06 0.0012 21.1 2.5 1 23 226 248 226 248 0.98
5 18 0.00011 0.022 17.2 0.6 1 23 263 285 263 285 0.98
6 18 6.2e-05 0.012 18.0 3.1 1 23 300 322 300 322 0.98
7 18 4.3e-07 8.6e-05 24.7 1.5 1 23 337 359 337 359 0.99
8 18 5.6e-05 0.011 18.1 0.0 1 23 438 460 438 460 0.97
9 18 1.4e-05 0.0027 20.0 2.1 1 23 466 488 466 488 0.99
10 18 0.044 8.7 9.0 1.8 1 23 495 517 495 517 0.98
11 18 7.3e-07 0.00015 24.0 2.3 1 23 523 545 523 545 0.99
12 18 0.051 10 8.8 1.8 1 23 552 574 552 574 0.98
13 18 3e-06 0.0006 22.1 1.5 1 23 580 602 580 602 0.99
14 18 0.00057 0.11 14.9 0.7 1 23 609 631 609 631 0.99
15 18 3.3e-06 0.00066 22.0 1.9 1 23 637 659 637 659 0.98
16 18 0.0024 0.48 13.0 0.3 1 20 665 684 665 687 0.93
17 18 4e-05 0.0079 18.6 1.3 2 23 694 715 693 715 0.96
18 18 3.6e-06 0.00072 21.8 1.3 1 23 721 744 721 744 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCACACGTACACTCCGGTCCCCCAACATTAATACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGCAACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGaacaacatcaacaacaacaggaAATGCAACAACAAGATGACGAGCTGAGCTTCAAAGGAATGGACGACGATGGCGTTGACATGGATATGGACGGACGACAATGTTCACAGGGTATGGGAGTGGACATGGGATCAGTACAAACTAAAATGGAAGTGTCGAATGGGGGTCAGTCGACGCCACGATCTAAACCACAGGCCTGTAAGGTCTGTGGCAAAGTTTTGTCGTCGGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTACCTAGAAGTGCACATGCGCACACACACAGGAGAACGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAGGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGTACTCATAAACGTATACACACCGCGGTAATGCAATCGCCGCAAAGACGCATTCCTGGCGCCCCAGCATCGTATCTTAATGCGGTGCTGGCTTTCAAAATTGGGTTCACAAATTTGGGGACGAATCGGTCGCCGCGTGCGACGCTCGATGCGGTCCGGATTGGCAGTGGGCGGGCGGCCACAGGCACGACCATGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCAACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGTCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTATgcttgtgatatttgtcagaaacGTTTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCTCACGTGGCCGACAAGCCTTTGAATTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCCCAGTTCGCGCTGCACATTCGCACGCACTCCACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGTTCCTTCGTAAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCCAACAGCATCGGCACCATCAACAGTGTTGCGACCAACACCAACAACTCTAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCAATGGTGAATCGTTACATGACATCTCAGGGGACCCAAGTGTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTCGTCGCCCCCTCCCTCGCACACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGAATGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTLIRSDSSHASIINMNQHHQQHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMDDDGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYRCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTAVMQSPQRRIPGAPASYLNAVLAFKIGFTNLGTNRSPRATLDAVRIGSGRAATGTTMRRRRALLAFVCALGAVQGRPFACGQCPAAFARRPNLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01085626;
80% Identity
-