Xxan015780.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- RTase
- Assembly
- GCA_905147715.1
- Location
- LR990646.1:5708970-5725924[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.36 4.2e+02 2.8 0.0 1 27 605 631 605 631 0.95 2 3 1e-13 1.2e-10 43.0 0.6 3 45 647 689 645 689 0.96 3 3 1.8e-11 2.1e-08 35.7 0.0 1 38 705 742 705 749 0.90
Sequence Information
- Coding Sequence
- ATGGCCATCAACGAAACTTGGCTCCGGCCGGGCGAGGAGGGGCGCGCTCCGGTGGTGCCGGGCTACCGTCTGCGTCACAAGCCGCGGCCAGCGAGTGTTCGCGCGGGCCGTGGTGGGGGCGTCGGGTTTTATGTGCGGCATGGACTCAGCGCGCGTACTTGGACAAGCGCGGTcgatcccaggttcgaatcggTCGAACAAATGTGGTTAACGATCTCACTGAACGGCAACAAAATTGCGATAGGAACAGCTTACCGTCCGCCGTGGCTTGACCTGGTCCTTTTCCTTGATGCCATAACAGATTCTATGAGTTCATTGGGAAGTTGTGACCATTACATTCTACTTGGCGACTTCAACGTTAATTTCCTAGACACAATGGGAATAAAAACGAAAACTGTTAATGAGTTTCTAAATTGCCTTAATCTTAACCAATTGGTCACAAGCCCTACTCACTTCACAGCATCCAGTGAAACTCTCATCGATCTTCTATGTACTGACCTGAGAGCAAGATTCACTGGGGTAGAATCGTTCGGTTCACTCAATGGCCATTCTATTGTAGTTGGGTTCAGAAAACAGCGCAGTACATCTACTGCTTTACTGGATGTAACTGATAACATTTTATCTGCACAAGATAAAGGAATGTGCACATTACTAGTTTTACTAGACTTTTCCAGGGCATTTGACGCTATTAATATACCATTGCTATTgtcaaagttaaaatattatggTTTCGACCCTAAAGCTATACAATGGTTCCGCAGCTATTTAAGTAACAGAGAACAACTAGTAGACCTGCGCTTGAGTGACGGCACTAATCTAAGATCGGCACTTATACCCGTAGAAAGAGGAGTCCCGCAGGGCTCTATTTTGGGTcccattttattcattttatactGCGCAGACATAATAAGATGCCTACAGAGATGCAAGTACCACATATACGCCGATGATGTACAATTATATATTTCCTTCAGACCTGACGACTATGACAGCGCCATTAAGGATCTTAACGAAGATCTCCAACGAATCGCGGTTTGGTCCGAGGAGAACTGCTTGTCGCTAAACCCTACAAAAACAAAGTATATGGTATTTGGTACCAGACAGCAGCTGGCTCGACTACCTTTGATTTTTGACCTAGAACTAATGGGTGAACAAATTGAACGAGTGTATGAGGCGCGAAATCTGGGTCTAACCATGGACAAAGACCTTCGTTTTGAGAGCCACGTAGCAGATTCGGTAAGAAACTGTTTTTATCGCCTGAAGGTTTTGTACAAGATGAGGCCTTATTTATCTGAAGCGCTTCGGGAACAACTTGTAGAAACCTTAGTCCTGTCTCGATTGAACTACGCCGACACTGTATACGGCCCGCGCTTATTGGCTCGTACAGATCGGCTTATACAAAGGGTACAAAACGCGTGCGCTCGATTTTGTTATAACATACCTCGCAGAAGTCATGTCACACCTTTTCTTAACAAGCATTTTTCGCTAAAAATGAAGTCCAGACGCAAGCTACACCTGGCTTGCCTTTTATTTGGTGTGGTCAAATACCAAAAACCGGACTACTTGTATAACAAACTAAGTTGGATAACAAGTAGGCGAGAATGTGGTAGAAGGCAATGTTCCCAACAACTCACAAGTCAGTCGCACAATACAGCTGCTTTCAGAGGCAGCTTTCGTTATGCGGCTTCCAAAGTATGGAATAACCTGCCACCACCAATAAGACTACTAAATACGATGGGCACTTTCAGAAGTCGTTTGCGGCAGTTTCTCATAGAAGCGCAACGACCAAAGCCTGCAAAACTACCTTCGTGGACGGAAGAACACTTACGTGCTGCTATGTCAGCTGTTACATGGGGATATATGACCAAGAAAGCAGCATCAGATCATTATGGTTCTACTAAATTGGGCTCGAAGCGTAAAATAGCTGTGTGGAGAGGAGAAGCCTTACGAGCTGCTATAGCAGCTGTAACAGAAGAAAACATGTCACAGAAAGCTGCCTCACGTCGGTATGGAATTCCTCGAAGAACTCTTAGAAGACACTTGCAAACGGGAAGTTCATTAAAACGAATGAGACGAAGTATGATTGAATTGCCTCCAAGGAGAGTAAAATGGTCAGAGGAAGATATGGAACAGGCAATAACGGCAGTAATACACGGTAACATGACACAGTGCGCTGCAGCAGAACTATTTGGCATTCCCAGACCAACACTAGCTGATCACCTGTCTAAAGGAAACATCGGGAAACGTGTGGGTCGACATTCTATAATGAACGAAACTCACGAAAAGATCCTCGTCAGCAGACTGATAGATCTAGCTAACAGTGGAACGCCGGTCACTCCACATGTAATATGCAAGCAAGCATTCCTTTTTTGCGAGAAGTTTAAGTTAAAGCATAATTTTAATAACGAAACTAGGCTCGCCGGGAAAAAATGGCTTAAGAGGTTCTTGAAACGACATCCTGAGGTTTCGCATTGTTTTTCCTAA
- Protein Sequence
- MAINETWLRPGEEGRAPVVPGYRLRHKPRPASVRAGRGGGVGFYVRHGLSARTWTSAVDPRFESVEQMWLTISLNGNKIAIGTAYRPPWLDLVLFLDAITDSMSSLGSCDHYILLGDFNVNFLDTMGIKTKTVNEFLNCLNLNQLVTSPTHFTASSETLIDLLCTDLRARFTGVESFGSLNGHSIVVGFRKQRSTSTALLDVTDNILSAQDKGMCTLLVLLDFSRAFDAINIPLLLSKLKYYGFDPKAIQWFRSYLSNREQLVDLRLSDGTNLRSALIPVERGVPQGSILGPILFILYCADIIRCLQRCKYHIYADDVQLYISFRPDDYDSAIKDLNEDLQRIAVWSEENCLSLNPTKTKYMVFGTRQQLARLPLIFDLELMGEQIERVYEARNLGLTMDKDLRFESHVADSVRNCFYRLKVLYKMRPYLSEALREQLVETLVLSRLNYADTVYGPRLLARTDRLIQRVQNACARFCYNIPRRSHVTPFLNKHFSLKMKSRRKLHLACLLFGVVKYQKPDYLYNKLSWITSRRECGRRQCSQQLTSQSHNTAAFRGSFRYAASKVWNNLPPPIRLLNTMGTFRSRLRQFLIEAQRPKPAKLPSWTEEHLRAAMSAVTWGYMTKKAASDHYGSTKLGSKRKIAVWRGEALRAAIAAVTEENMSQKAASRRYGIPRRTLRRHLQTGSSLKRMRRSMIELPPRRVKWSEEDMEQAITAVIHGNMTQCAAAELFGIPRPTLADHLSKGNIGKRVGRHSIMNETHEKILVSRLIDLANSGTPVTPHVICKQAFLFCEKFKLKHNFNNETRLAGKKWLKRFLKRHPEVSHCFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -