Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-11 1.3e-08 36.4 0.0 4 39 72 108 69 112 0.90

2 4 1.6e-11 1.9e-08 35.9 0.6 3 39 125 161 123 165 0.92

3 4 2.6e-14 2.9e-11 44.9 0.0 2 45 179 223 178 223 0.96

4 4 3.2e-18 3.7e-15 57.4 0.1 1 43 230 273 230 275 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-11	1.3e-08	36.4	0.0	4	39	72	108	69	112	0.90
2	4	1.6e-11	1.9e-08	35.9	0.6	3	39	125	161	123	165	0.92
3	4	2.6e-14	2.9e-11	44.9	0.0	2	45	179	223	178	223	0.96
4	4	3.2e-18	3.7e-15	57.4	0.1	1	43	230	273	230	275	0.95

Coding Sequence: ATGCGCTGGATCCTGGTTGATCAGATCAGGCTCATACAAATTTTGGACATCTCCTTTGCTAGCCAAGATTCATATAGCAAAATTCTGCTTTACATACGAAACGATGATCGGACGATCCAACAACCACATCTTAGCGGTGACGACACAAGCGACTCCTGCGGCCGGCAAGCCTCGCCCGCGCCGCGACAGAGCCCCAAGAGCTGGACACAGCACGACATGGAGCGAGCTTTGGATGCTCTCAGAAACCACCAGATGAGCCTTACGAAGGCATCAGCAACGTTCGGCATCCCGTCCACCACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCGTGGAGCCAGGCCGACCTGCGGGCCGCGCTGCAGGCGCTGCGGGCCGGGGCCATCTCCGCCAACAAGGCCAGCAAGGCTTATGGCATTCCCAGCAGCACTCTCTACAAGATAGCTCGGCGAGAGGGCATCCGACTGTCGGCGCCATTCAACGCAGCTCCTACCGCCTGGCGCCGCGCAGACCTGCAGCTAGCACTCGCCTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGAACGCTGTATGGTCGGTGTAAGCGAGAAGGTATCGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCCGAAGACGCCATGGGTGAAGCACTCGAAGCTGTCAGGGTGGGGCAGATGTCCATCAACCAGGCTGCGATACACTACAACCTGCCGTATTCTTCTCTGTACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGAGTGTCCCACAAAACCAGCAGCAACCGCAGCAAGATACACACAACATGGAGCAAGAGCTGCAGCCGCACTCACTGCCGCACCACTACCCGCAGCAGCACGACCCGCACGCGTACGCACACGCGCACcactacacacacacgcacGACCAGTACGGGCAGGCCCAGTACTATCAGGGCTTTAGCAGTATAGCCACCAGCTGA
Protein Sequence: MRWILVDQIRLIQILDISFASQDSYSKILLYIRNDDRTIQQPHLSGDDTSDSCGRQASPAPRQSPKSWTQHDMERALDALRNHQMSLTKASATFGIPSTTLWQRAHRLGIDTPKKEGAAKSWSQADLRAALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNQQQPQQDTHNMEQELQPHSLPHHYPQQHDPHAYAHAHHYTHTHDQYGQAQYYQGFSSIATS*

Sequence clustering based on sequence similarity using MMseqs2