Xsex002399.1
Basic Information
- Insect
- Xestia sexstrigata
- Gene Symbol
- -
- Assembly
- GCA_941918865.2
- Location
- CALNXB020000032.1:226749-261174[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0028 0.23 12.5 2.6 3 23 241 261 239 261 0.97 2 11 0.0004 0.033 15.2 6.5 1 23 357 379 357 379 0.96 3 11 0.0027 0.22 12.6 6.9 1 23 385 407 385 407 0.98 4 11 0.00055 0.045 14.8 1.5 1 23 413 435 413 435 0.97 5 11 1.1e-05 0.00094 20.1 0.9 1 23 441 463 441 463 0.97 6 11 2.5e-06 0.00021 22.1 0.1 1 23 469 491 469 491 0.98 7 11 8.8e-05 0.0073 17.3 0.4 1 23 496 518 496 518 0.96 8 11 0.84 69 4.7 3.6 3 19 526 542 525 548 0.90 9 11 4.3e-05 0.0036 18.2 0.4 1 23 648 670 648 670 0.97 10 11 0.00011 0.0093 16.9 1.4 1 23 918 940 918 940 0.96 11 11 4.6e-05 0.0038 18.1 4.3 1 23 950 972 950 972 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACTCCTAACAATGTTTCGGGCTTCGGTTATTCGTGGGGCTTCACGAGTTCTGCGGACCTTACGAAGGGTGAAGTGGAAACACCGAGTAGTCTGAGCTATACTTTGGGCAATACGGTTTCCCCAGAAACAACACTGACTGTTATGTCCCACAAGACACCACAAGTCCAAGAAAAAGCCGGTGCCGTCACAGTAGCAGTATCAAATGCAGGTGCACAATTAACCAGGGTGGTAACTACAGGCACACCGGTCTCAGGAAGACGGATGTTTGTGGTGAACGATGCCACAGCCCATACATTGAACAGGGTGACACAGCAGAATCAGACAACTACCATACATACGAATTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGCTAACGGCGGAAGAATGCAACGAGATTTTGATGAAGAGGGCTCTTCAGGCCCAGGGCATCGCAACTCCGGTCATAGATGCGTCGCAACTGAACCATACGATATTGAACGGGAGCCTGAAGAGTCTAGCGGAAGCGACCCAGCAAACGCAGGCGGAGACGATTCAAACCACGACAGTACATCAGCATCATTTGTTACATGCGAAACAAGAGCCTGGGACTACTAATAATTCGCCTAAAACGGTATATTCGCAGACGGAGCTGATGAACACGAACTCGGTGATGACGACAGCGCCGCCCGCCGCGGTGAAGGAGCGCCCTTACGGCTGCGACGAGTGTGGCAAGTCCTTCCTGCTCAAACACCATCTTACGACGCATGCGAGGGTACATACAGGTTGGTGCGCTTTTAATTATGTTGACTTAGGCTCGGACTTCACCAAAACGGAGATGAGCGGAACGCCCCAGACTGTGGCTGGTCCGAGTGGACTGAATCACAAGCGAGATCGAAGTAGCAGCAGCAACAGTAGTGCGACAAGTGTTAGTTCTTCAAGTACGTCTACTTCAGGCAGCAAACAAGCGCGATCCAAAAACCGCCGCCGCCGCCATAAGAAAAAGAAACGTGCTCGACATTCCAGTCAGATGGACAAGCTTTTTAAGGAAATCGGTGAACGGCCTCATGTCTGCGCGCATTGTGGGAAAGCGTTCGCGAGGAAGCACTGTCTCAACACACATTTGTTGCTGCATTCTGCGGAGAGGCCGTATAGGTGCCACGAGTGTAAGATGGCGTTTACGTTGAAACATCATCTTGTTACGCATTCTAGGGTGCACAGTCGTGAGCGTCCGTTCGTCTGTAACGAGTGCGGGCGCGGGTTCCCTCTGAAGCGGCACCTGGTGACGCACAGCAAGTACCACGCGGGCGAGCGGCCCTACGTCTGCAGCGACTGCGGAGAGAGCTTCGCGCAGAAGGAGCACCTAGTAATGCACAGTCGTTTCCACGGCTCCCTCTCCCCCTACGTGTGTCCGGACTGCGGCGTGACGTTTGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGCCGGGTCCCGCACGCCTGTCCCGTGTGCGGGAAGGAGTTCCTGCAGAAGAGGACACTCGTCGCGCATATGAAAATCCACACAGGGGAAGGTGCAGTCGCGTGCTTAGAGTGTGGTGAAGCTTTCAAATGCAAGTCAGAATTGCAGCAACACTGTAAAATGACGCGGCACTGTCTACAATCGACGCAATCTCAACAACAACAACAGCAGCAGCAACAACAACAACAACAGCAGCAACAACAACAACAACAGCAACAAGCACAGCAACAAGCTCAGCAACAAGCGCAACAGCAAGCGCAACAACAAGCACAGCAACAAGCTCAGCAACAGCAACAACAACAGCAGCAACAACAGCAACAACAACAACAGCAACAAGCTACTGTGATAAAACAAGATGATTTTAAACCGCAAATTGTACAGGTTATTGGTGCGGATGGTCAAATAGTATCAGAGAAAACGACGCCGGGGTACGCGTGTCCAGAGTGTGGTTCCTGTTTCAACACGAAGGAGGCGCTGTCCCTGCACGTGAGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACACGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACAGTATGTATCTACTTATTGTTACATGGAGCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACACGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACAGTATGTATCTACTTATTGTTACATGGAGCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACACGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACAGTATGTATCTACTTATTGTTACATGGAGCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTCGCCGCGCACTCGCAGCACAGTTTCATTATTCCAGATCAGCCTAACATACAGATAATTTCGTCGAACTCTAACAACGTTGGCCATACGCAAGTTATAGCGGCGAATCATCAAATAACGACACCTAGACCGAAGGTTCACTTTTGTGGCGACTGCGGGAAAGGTTTTGCGGCTAAACATGGTCTGTTGGCGCATCAGAGAAGACACCCGGAAGGAAGCTGCACACTGCGCACGCACGTGTGCGACCAGTGCGGGAAGGCGTTCTTCCAGAAGAACCATCTCATGCTGCACCAGAGGCAGCACATGGACCTGCCGCCCCGCAGTGTAAGCAAATACCCTAACCTTTACGCCTCTGCTCCCGCCAAGAGTCAACCTGTAACGCAACAAGCCGCGCAACAGGCAGCGCAACAGGCGGCGCAACAAGCTCAAGTGCAACAACAAGTGCAACAACAGGTGCAACAACAGCAACAACACCAGCAACAGGTGCAACATCAGAACAGTCTGGAGTTGGAGCAACAGGAACATCAGGCTACGCATATACAAGTTGTAACGAACAGATCAGGGCAAGTCATCGGTAACCAGATCGTCGTTGGCTCGCTAGGCGGTACGCGGCGTCTGGTCGCGCCGCTACACATCGTGGGGAGAGATATCAAGCCCAACATCGCACATCTCACGCACAAGCACCATGCGAGGCAGCACACTACCAGCGGCGACGCAAAAGAAGTCGGCGGCCTCGTCCTGTCAGCGGGTCGAACAGGCCTCATCAAGTACGAGATCTCGCTCCCCCCCCCCACGTCTGTGGTCCAAGTGCAGCAACTCGACTGA
- Protein Sequence
- MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKAGAVTVAVSNAGAQLTRVVTTGTPVSGRRMFVVNDATAHTLNRVTQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGSLKSLAEATQQTQAETIQTTTVHQHHLLHAKQEPGTTNNSPKTVYSQTELMNTNSVMTTAPPAAVKERPYGCDECGKSFLLKHHLTTHARVHTGWCAFNYVDLGSDFTKTEMSGTPQTVAGPSGLNHKRDRSSSSNSSATSVSSSSTSTSGSKQARSKNRRRRHKKKKRARHSSQMDKLFKEIGERPHVCAHCGKAFARKHCLNTHLLLHSAERPYRCHECKMAFTLKHHLVTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACLECGEAFKCKSELQQHCKMTRHCLQSTQSQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQQQQATVIKQDDFKPQIVQVIGADGQIVSEKTTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHSQHTHVRDGPVRAHGGAAARPGRRALAAQYVSTYCYMERTCVTDLCALTAALQPGLVAAHSQHTHVRDGPVRAHGGAAARPGRRALAAQYVSTYCYMERTCVTDLCALTAALQPGLVAAHSQHTHVRDGPVRAHGGAAARPGRRALAAQYVSTYCYMERTCVTDLCALTAALQPGLVAAHSQHSFIIPDQPNIQIISSNSNNVGHTQVIAANHQITTPRPKVHFCGDCGKGFAAKHGLLAHQRRHPEGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSVSKYPNLYASAPAKSQPVTQQAAQQAAQQAAQQAQVQQQVQQQVQQQQQHQQQVQHQNSLELEQQEHQATHIQVVTNRSGQVIGNQIVVGSLGGTRRLVAPLHIVGRDIKPNIAHLTHKHHARQHTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01535176;
- 90% Identity
- -
- 80% Identity
- -