Xsex010099.1
Basic Information
- Insect
- Xestia sexstrigata
- Gene Symbol
- -
- Assembly
- GCA_941918865.2
- Location
- CALNXB020000160.1:1662587-1672697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.92 76 4.6 0.2 3 23 79 100 77 100 0.88 2 25 2.3 1.9e+02 3.3 0.2 3 22 128 147 128 149 0.85 3 25 0.058 4.8 8.4 1.5 2 23 172 193 171 193 0.95 4 25 8.6e-07 7.1e-05 23.6 1.0 1 23 197 220 197 220 0.94 5 25 0.75 62 4.9 0.2 3 20 226 243 225 245 0.90 6 25 0.11 9.2 7.5 1.0 1 23 252 275 252 275 0.93 7 25 0.00061 0.051 14.6 1.9 1 23 284 307 284 307 0.94 8 25 0.067 5.6 8.2 0.2 1 17 312 328 312 329 0.91 9 25 1 83 4.5 0.3 2 23 362 384 361 384 0.94 10 25 2.4 2e+02 3.3 0.6 3 23 410 431 408 431 0.93 11 25 2.1e-05 0.0017 19.2 0.4 1 23 479 502 479 502 0.96 12 25 0.067 5.6 8.2 0.5 3 20 509 526 508 528 0.93 13 25 7.7 6.3e+02 1.7 6.7 3 23 537 558 535 558 0.90 14 25 0.058 4.8 8.4 2.6 1 23 565 588 565 588 0.94 15 25 0.45 37 5.6 0.0 1 17 721 737 721 738 0.88 16 25 0.00059 0.049 14.7 0.2 2 23 769 791 768 791 0.96 17 25 0.021 1.7 9.8 0.2 2 23 817 839 816 839 0.94 18 25 0.93 77 4.6 1.1 2 23 862 883 861 883 0.95 19 25 3.8e-07 3.1e-05 24.7 1.8 1 23 887 910 887 910 0.96 20 25 0.17 14 6.9 0.8 3 21 917 935 916 936 0.92 21 25 0.84 69 4.7 0.2 1 21 943 963 943 966 0.88 22 25 0.0032 0.27 12.3 1.8 1 23 973 996 973 996 0.97 23 25 2.6e-05 0.0022 18.9 0.9 1 23 1001 1023 1001 1023 0.96 24 25 2.3e-06 0.00019 22.2 1.1 1 20 1029 1048 1029 1051 0.94 25 25 0.035 2.9 9.1 5.1 1 23 1057 1079 1057 1080 0.95
Sequence Information
- Coding Sequence
- ATGAGACCTACACCACCTAAACCAGTTCCAAATTTCGCAAGAAACTCTTCGCGAAAATTGCAGTACATCATCACAAGCGTATCGAAGCGCATCTCCTACAAAAACTTAAGTGACAAAGGACCATTTCTTTTTGTTCTAGAGTTCGATCCGTTGGTCGAAGCCAGACATAATGCTAAGCTCGTTCTGAGATACACAACCGCTTATCCATTCAGGATACCCGCTCACGAAATGGTGTGTGTTTACTGCTGCGACGCTTTCGAAGACCCGGCGGATTACAGAGACCACATGAAAAAAGACCATTACCAACCCAACGTCAAACATGCTTTCTCACACGCCGTGGGGATAGAGGAATACCTCAAAGTTGATTGCACGGATCTAGGATGCAAAATCTGCGCTAAAAAGTTCGAATCCGTAACTTCCATATCGGAACATCTCGTCTTAGAACATAACAAGCTATTAAATCTTAACGCGGAGATCGGGCTGCAAATCTTTAAGTTAGGGGCCGAAAGATGGGTTTGTGCGACTTGCTCCCAAAAGTTCCCGTCTCTTAGATGCTTATCGAGGCATACTAACGGGCACTATCATAAGTATACATGCGAGACTTGTGGTAAATCATACATCAGTCGAGACAACTTGAAAAGGCATATTCTCTTCAGTCATACCGAGGAAAAGTTTTGCATGAAGTGTCGGAAGTCCTTTCCTAATATCAAAGAGCGCCGTGCTCATGTCTTGGAAAGCAATAGATGCTGGCCATTCTGCTGTACTGTTTGCGGAGACAGATTTGTGTCGAGAAAGCTGAGACAGGAGCACATGGCCGAAGCCCACAATGTAGAAATCAAGAATAAACTCTACAAATGCCCTGAATGCCAGGAATCTTTCACGGAGTATGGACATTATAGATCACACTTCATCATCACGCATACGGACGATAACTACGTCTGCCAATTCTGCGGAATAAAGTTCGCGAGCAAAAGCcgtttggaagAGAAGCAAAATGACCCGAATTTCATCTCGAAACGGAACGCCGAGATTATTGTGAAATATTCCACCGTTTACCCATTCAAGCTGCCTGAAGACAATATGGTTTGTGTTTACTGTTGCGAGACCTACCCGGACCCCGAAGTCTTCAGAACGCATATGAACGAGGAACACGAAACCTTCAACCCCAAAATGGCTTTCGTCCATTGTTCCGAAGGATATATTAAAGTTGACTGCACTAATATCAACTGCAGACTCTGCTTCAAACACTACCAGGATTTGGATCAAATCGCAGATCACCTCTTGTCCGAACATAAAAAGCCTATCAATCTAACCGTTGCGTTAGGTCTACAACCTTTCAAATTAGAGGACAACAAGCTTTTCTGTGCAATATGCCACTACAAGGCCGTATGCTTAAGACAGTTATCCCGTCACACACAGAGCCATTTCTGGAGGTACACTTGCGAAGCCTGCGGAAAATCATACGCAACCAACACAGCATTGCGCAGTCATATAAGATTCTCGCACATTGGCGACGAAAAGATATGCCGCAAGTGCAAACGCACTTTCAGCTCTATAGAGGACAGACGGAAGCATTTACTGGAGTCTCGGAAATGCTGGTCTCATCTCTGCTGTGTTTGTGGCGAAAGATTTATGTCCTGGCATGCTAAACAACAACACTTGACAGAGTGCCATAGCGTTGAAAAGAAAGTTTACGTGTGCCCGGAATGTGGGCAAATTTACCATGAGCGCAAGAAATATAGGACACATTTTAAACTCAACCACACTGATGATAATTACGTCTGCTCTTGCTGCGAACAAAATCCGATGTTCATCGCGAGGCAGAACGCCAAATTGATGATAGAGTATACAACGGCTTACCCCTTCAAGTTGCCTGAATCCTCCATGGTTTGCGTATACTGCTGTGATAGTTTCCCAGATCCCGCGAGATTTAGGGAGCATATGGATTTAGAGCATCAAGACTTTAAAGTACGGATGGCTTTCGTTCACGTCGCCGAAGCAGCGGTTAAAGTCGACTGCACTCACCTAAAATGTAGAATCTGCTTCGAAACTTTACCTGATTTAGAACAAGCGGCAGAACATTTAGTCAAACAGCACAATAAAAACATAAATCCGACACATGACTTAGGCATGCACCCGTTTAAAATTTATAAGGACAAATATTCTTGCGCGATCTGTACTGAGAAATTTTCAACGATAGCGTTGTTAAACGTGATGCGTCCGTTGTCCGTCGCGAGACGGAATGCAGAAACTATCATCCTGAACGCCACCGTTTACCCCTTCCGACTGCCGGACACTGCCCTAATGTGCGTATATTGTGGGGAAAGTTACAACGACGCTACGCCATTCAGACAACACATGAAAAAGGAACATTTCAACTTCAAAGTCAAAACCGCATTCGCCCATATCTCATACGAAAGCTACCTCAAAATTGACATCACAGAAATGACCTGCAGAATTTGCTTTGAAACCTTCCCAAGACTTGAGGAGATCGCACGGCATTTGAACGAGAGACATACCGCCAAAATCAACTTTGACTTCCAATTAGGACTGCATCCTTATAAATTCGCACAAGATAAACTTATGTGTGGGATTTGTGATCTGAACTTCCCCTGTATGAGACAGGTTAGTCGTCATATGACTACTCACTACCAGAACTTTACGTGTGATACTTGTGGCAAGTCCTACACGACAAATAGCTCCTTGCAACAGCATATTCGATTCTCACACATAGCAGCTGATAGAATATGCAGGAAATGTAAAGAAACGTTCAGTTCTTTAACAGCGAAGAGGGAGCATATGACCAAATCTCCCAAATGTTGGATGTATCAATGCTTGACGTGTTTTGAAAGATTCATGACATGGCCCGCCAAAGAACAGCATTTAGTTGACGCTCATGGGCAATCCAAAAAGTCATATTCTTGTTCCGAATGCAGTCTTACGTTTACTACTAGAAACGCATATAGAGGACATTTTAATACGACTCACGCTGAAGTTAATTTCCCTTGTACTTACTGCGGACGGAAATTTGCGTCCAAAAGATATTTGGAACAGCACAATCTGGTCCATACAGGAGAAAAAGCCTTTCAGTGCAATGTGTGCTCTAAATCTTTTCCCAGAAAGAAGAATCTTACTCAGCACATGTGGGTTCACAGTGACTTTAAAAGGTTTGAATGCAGGGCGTGTAAAAAGCAGTTCAATCAAGGACATAGTTTTAAGGCGCATATGAAAGGGCATCATCCTGAGCTTCCTGAAGAAAATTGGCAATGA
- Protein Sequence
- MRPTPPKPVPNFARNSSRKLQYIITSVSKRISYKNLSDKGPFLFVLEFDPLVEARHNAKLVLRYTTAYPFRIPAHEMVCVYCCDAFEDPADYRDHMKKDHYQPNVKHAFSHAVGIEEYLKVDCTDLGCKICAKKFESVTSISEHLVLEHNKLLNLNAEIGLQIFKLGAERWVCATCSQKFPSLRCLSRHTNGHYHKYTCETCGKSYISRDNLKRHILFSHTEEKFCMKCRKSFPNIKERRAHVLESNRCWPFCCTVCGDRFVSRKLRQEHMAEAHNVEIKNKLYKCPECQESFTEYGHYRSHFIITHTDDNYVCQFCGIKFASKSRLEEKQNDPNFISKRNAEIIVKYSTVYPFKLPEDNMVCVYCCETYPDPEVFRTHMNEEHETFNPKMAFVHCSEGYIKVDCTNINCRLCFKHYQDLDQIADHLLSEHKKPINLTVALGLQPFKLEDNKLFCAICHYKAVCLRQLSRHTQSHFWRYTCEACGKSYATNTALRSHIRFSHIGDEKICRKCKRTFSSIEDRRKHLLESRKCWSHLCCVCGERFMSWHAKQQHLTECHSVEKKVYVCPECGQIYHERKKYRTHFKLNHTDDNYVCSCCEQNPMFIARQNAKLMIEYTTAYPFKLPESSMVCVYCCDSFPDPARFREHMDLEHQDFKVRMAFVHVAEAAVKVDCTHLKCRICFETLPDLEQAAEHLVKQHNKNINPTHDLGMHPFKIYKDKYSCAICTEKFSTIALLNVMRPLSVARRNAETIILNATVYPFRLPDTALMCVYCGESYNDATPFRQHMKKEHFNFKVKTAFAHISYESYLKIDITEMTCRICFETFPRLEEIARHLNERHTAKINFDFQLGLHPYKFAQDKLMCGICDLNFPCMRQVSRHMTTHYQNFTCDTCGKSYTTNSSLQQHIRFSHIAADRICRKCKETFSSLTAKREHMTKSPKCWMYQCLTCFERFMTWPAKEQHLVDAHGQSKKSYSCSECSLTFTTRNAYRGHFNTTHAEVNFPCTYCGRKFASKRYLEQHNLVHTGEKAFQCNVCSKSFPRKKNLTQHMWVHSDFKRFECRACKKQFNQGHSFKAHMKGHHPELPEENWQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -