Xsex017197.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Xestia sexstrigata
Gene Symbol
-
Assembly
GCA_941918865.2
Location
CALNXB020000301.1:1-11221[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 9.8e-05 0.0081 17.1 0.1 3 23 135 155 134 155 0.97
2 19 8.9e-07 7.3e-05 23.5 1.2 1 23 161 183 161 183 0.99
3 19 5.5e-06 0.00046 21.0 2.7 1 23 189 211 189 211 0.99
4 19 5.1e-06 0.00042 21.2 2.5 1 23 226 248 226 248 0.98
5 19 8.8e-05 0.0073 17.3 0.6 1 23 263 285 263 285 0.98
6 19 5e-05 0.0042 18.0 3.1 1 23 300 322 300 322 0.98
7 19 3.5e-07 2.9e-05 24.8 1.5 1 23 337 359 337 359 0.99
8 19 0.00016 0.013 16.5 2.8 1 23 365 387 365 387 0.98
9 19 4.6e-05 0.0038 18.2 0.0 1 23 466 488 466 488 0.97
10 19 1.1e-05 0.00091 20.1 2.1 1 23 494 516 494 516 0.99
11 19 0.036 2.9 9.0 1.8 1 23 523 545 523 545 0.98
12 19 6e-07 4.9e-05 24.1 2.3 1 23 551 573 551 573 0.99
13 19 0.041 3.4 8.9 1.8 1 23 580 602 580 602 0.98
14 19 2.4e-06 0.0002 22.2 1.5 1 23 608 630 608 630 0.99
15 19 0.00046 0.038 15.0 0.7 1 23 637 659 637 659 0.99
16 19 2.7e-06 0.00022 22.0 1.9 1 23 665 687 665 687 0.98
17 19 0.002 0.16 13.0 0.3 1 20 693 712 693 715 0.93
18 19 3.2e-05 0.0027 18.6 1.3 2 23 722 743 721 743 0.96
19 19 2.9e-06 0.00024 21.9 1.3 1 23 749 772 749 772 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCACACGTACACTCCGGTCCCCCAACATTAATACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAACAACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAACATCAACAACAACAGGAAATGCAACAACAAGATGACGAGCTGAGCTTCAAAGGAATGGACGACGATGGCGTTGACATGGATATGGACGGACGACAATGTTCACAGGGTATGGGAGTGGACATGGGATCAGTACAAACTAAAATGGAAGTGTCGAATGGGGGTCAGTCGACGCCACGATCTAAACCACAGGCCTGTAAGGTATGTGGCAAAGTTTTGTCGTCGGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTACCTAGAAGTGCACATGCGCACACACACAGGGGAACGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAGGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGTACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGCGGTAATGCAATCGCCGCAAAGACGCATTCCTGGCGCCCCAGCATCGTATCTTAATGCGGTGCTGGCTTTCAAAATTGGGTTCACAAATTTGGGGGCGAATCGGTCGCCGCGTGCAACGCTCGATGCGGTCCGGATTGGCAGTGGGCGGGCGGCCACAGGCACGACCATGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCAACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGCCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGTCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCTCACGTGGCCGACAAGCCTTTGAATTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCCCAGTTCGCGCTGCACATTCGCACGCACTCCACCGGCTCCTGCTACGAGTGCAGTGTCTGCGGACGTTCCTTCGTAAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCAGCCAACAGCATCGGCACCATCAACAGTGTTGCGACCAACACCAACAACTCTAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAG
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTLIRSDSSHASIINMNQHHQQHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMDDDGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYRCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTAVMQSPQRRIPGAPASYLNAVLAFKIGFTNLGANRSPRATLDAVRIGSGRAATGTTMRRRRALLAFVCALGAVQGRPFACGQCPAAFARRPNLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSSNFDSPGVCDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01085626;
80% Identity
-