Xrho032460.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- pol
- Assembly
- GCA_963853795.1
- Location
- OY970784.1:6247082-6282274[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9 9.2e+02 1.7 3.4 1 19 723 741 723 745 0.89 2 10 0.0035 0.36 12.4 1.2 1 23 752 775 752 775 0.93 3 10 0.51 52 5.6 0.2 1 23 779 801 779 801 0.92 4 10 0.058 5.9 8.6 1.1 1 23 806 829 806 829 0.97 5 10 0.0053 0.55 11.8 0.3 1 23 833 856 833 856 0.96 6 10 2.3 2.4e+02 3.5 0.2 3 23 945 966 943 966 0.94 7 10 0.0073 0.74 11.4 0.6 2 20 982 1000 981 1003 0.92 8 10 5.5e-05 0.0056 18.1 3.1 1 23 1009 1031 1009 1031 0.99 9 10 0.00042 0.043 15.3 2.8 1 23 1038 1060 1038 1060 0.98 10 10 7.1e-05 0.0073 17.7 0.7 1 23 1066 1089 1066 1089 0.93
Sequence Information
- Coding Sequence
- ATGCTAAGAAGACTGGAAAGAAAATTAGACGACAACCAACCAGACGAGCAAGCAGGTTTTCGTAGAGGTTACTCAGTATTAGACCATATACATGCTACGAGGCAGATCATAGAAAAATCCTATGAATACAACCAATTATATTACATGGCATATATAGACTACAGCAAGGCTTTCGACTCTCTATTTCACAATAAGATATGGGAGACCCTAAAAGAACAAGGCATCGAAAGCAAGTACATAAGGATACTGAGGAAGATATACAAGGAAAGTACAGCGTGCATACAGTTAGAAAAGAAAGGGGAACTGTTTAGCATACAAAAGGGTGTGCGACAGGGCGACCCGCTATCCCCAAAACTTTTTTCTGCAGTCCTCGAAATGATATTTAGAAGACTAAACTGGGACGGATATGGAATAGACATCGATGGAACCTGGTTAACACATCTAAGATTTGCAGACGACATAGTTCTCTTTGCAAAAACCCCACACGAACTGAATGTCACGGCAAACGATCTGGCATTAGAAAGTCACAGGGTGGGATTAAAAATGAACATGGAAAAAACGAAAGCAATGACCAACGGACCTAAAAATGAAACCATCGTGGTTGGCCAAAATGAGATAGAATATGTGGATGAATACATCTATCTAGGCCAAATTATCTCACCTACAGACaacattgaaaaagaaattaacAGGAGAATAGCAAACGGATGGAAAAGATATTGGGGCatgaaagaaataatgaaagacAAAGAACTGCACATATCAATTAAATCTAAAGTATTCAACACATGCATTCTCCCTGTATTGATGTACGGAAGTGAAACATGGGCCCCCACTAcattgaacattaaaaaattaaacatatgcCAGCACTCGATGGAGCGAAGCATGATGGGAATCAAGAAAAAAGATCGAGTCAGGTTAGAAGACATTAGGAAAAAAACAAAGGTTCGGGATATAGCAACAAATGTTAGgaaactaaaatggaaatgggctgGGCATATGAGCAGAGGGAAGGAGAAGTGGAGCAAGAAGGTCACAGAATGGTACCCCAAGAACGGCATAAGAAGGAGGGGAAGACCCCGCCAAAGATGGGAAGACGACCTGGTCAAGTTCGCAGGTGTGACCTGGAGCCGGGTTGCGAAGGACAGAAATGAGTggaaaagGTTTCCAAAACCTCTTGAACTCCGCAAAGCATGGCTGGAATCCCTGGAAATGTCAGAATATGAACTCAAAGAGAGAAGTTGTATATGCTCAGATCATTTCAAGGATGAGGACATTTACGAGACTAAGGCAGGTTTAAGACGGATCAAGGACGGAGCTGCACCTGTCGTGATGCCTGATAATCCAAACGTAGATGAAGATGACGCGCCAGCCGCATCGAGGgtGTGCCGAATTTGCTTAGTAATGGACACAAAGATGTATCAAATACGAGATTTTCAGCTGGATCAGATGTATGAACAAATAACTGGATTAATGGTGAGGCCAGACGATCGATTCCCGCAGCGAGTTTGTTGGGAATGCGCCGGCCGTCTAAACGCGGCGAATAACTTCAGAATGAAGGCGTTGCGCGGCAGCTCCGTGATGTATGACATCCTACAGGCTGGTCTTTATATAAAAATCcgtgacataaaaaaaattaacagaaaAAAGTACAACCTAACTACAACATTAGTTCAACAAATATACGAAGATGGGGATTTCGACCTACGAATCAAAGATTTAAGTATCAAAACGGAAGCTGCGCGTGAAATATCTGAAACTATACCAATGGAAACAGAAGAAATCGATGTCAAAAGCCTAGAACCTATAAACGAGATTGAGGTTAAAGCAGAAACTGCCAACAATGAGATTTTCTTCGAGGCCTTCGATGATCATTTTAGTGATGAAGATGATAAAGCTCTCAGTGAAGTGTATGTCGAGAGAAAGGAGGTGCCGCAAATTAAGAAGAAAAAGGTGAAGGTTGTAAGAAAAGTTAAACAAAAGAAAGTCGAGGAGGATGATGATCCGGATACAGCTACTGATAGgtacaaaacaaatgaaataaaacgcCGTCGGAACGTGGAATTCGACGAGTCTCTATTCACGATAACATCTTTAACTTACGACGAGCAGATAGAAGAGATTCTCAAACGGAAGGAGTCTTACAACTACACCAGCGCCCCCTTTAAGTGCACTGTGTGCTATAGAGGGTTCCAGATCAAAGATCGGTTCACTGCGCATTGTGTGAGGCATACCGAGcaTTGCGGCGCCTACGAATGTTTCATTTGCAAAACTCGGTTGAAGACGAGTCGAGCGCTGCGGAAACACCTGACCGCGCAACATACggaacaatatagctgtaaggGGTGTCCGTTCGTCACTAGGAATAGAGGTGTAGCGAGAGAACATGAGAAATGGCATGGAGGGACGAAATACCAGTGCCCACATTGTGCTAGTTCGTTTGAcaaAATCACCACATATATGGGTCATATTCGCATCAAGCATGTGTCAGACTTTGTGTGTGAACTGTGCGGGTACACATTTGTCAGTGAAAAGGGTATTGCGGTACATAAGAAGAAAAAACATCGAGTTGATAAGGAGTTAACATTAGAGGGGCCTTACTGTGAGACGTGTGACGTGAAGTTCTTAGACGAAGAGGCTCACGAGCGTCATCTCAAGTTGTCCGCAAGACATAGCAGTGATCATGACCCGAACCGGATCCGGAATGACTCCCAAAGCATGAACGCAGAACGCAACGGTCGTGTGATGCGTCGCATAGAACGCAGGCCGGTCATACACCCGCGGCCGACGAGCGACAGTGATCAACAGGACCCGCAGACTCCCGTCAACTGTGAACAGTGCGGCATTCAACTCCGCGACCTGCGAGTGTACGCGCAGCACTTCAGACGGATGCACCCCGACAAGAACCGAACCAAGTACCCCGCGATGAAGACCCCCTGCATGTGTGAGCAGTGCGGCAAGATATTCCAGAGTATGGCCCTCCTAAAAGACCATATGTGGGTACACACGGGTGAGAAACGCTTCAAATGTGACCGCTGCACCAAGAGTTTTACACAAAAGACCAACCTGGTGTTCCATATGAGGGTCCACAGCGCTTCGCGGCCGAGCTACGAGTGCCCACTGTGCGGGAAACACTTCGCGTTCTTCAATAATAGAAGACGACACATGTTTATCCACACCGGCCTCAAGCCCTTCAAATGCGACACGTGCGGCAAGAGCTTCACGACGGCGGGCGAGCAGCGCGCGCACGTGGAGCACGTGCACATGAAGAAGCCCTGGCCCAAGCGCGCGCGCACACGCCACCGCGACTGGAAGTGCGGCGAGCCCGGCGTGGAGGACTAG
- Protein Sequence
- MLRRLERKLDDNQPDEQAGFRRGYSVLDHIHATRQIIEKSYEYNQLYYMAYIDYSKAFDSLFHNKIWETLKEQGIESKYIRILRKIYKESTACIQLEKKGELFSIQKGVRQGDPLSPKLFSAVLEMIFRRLNWDGYGIDIDGTWLTHLRFADDIVLFAKTPHELNVTANDLALESHRVGLKMNMEKTKAMTNGPKNETIVVGQNEIEYVDEYIYLGQIISPTDNIEKEINRRIANGWKRYWGMKEIMKDKELHISIKSKVFNTCILPVLMYGSETWAPTTLNIKKLNICQHSMERSMMGIKKKDRVRLEDIRKKTKVRDIATNVRKLKWKWAGHMSRGKEKWSKKVTEWYPKNGIRRRGRPRQRWEDDLVKFAGVTWSRVAKDRNEWKRFPKPLELRKAWLESLEMSEYELKERSCICSDHFKDEDIYETKAGLRRIKDGAAPVVMPDNPNVDEDDAPAASRVCRICLVMDTKMYQIRDFQLDQMYEQITGLMVRPDDRFPQRVCWECAGRLNAANNFRMKALRGSSVMYDILQAGLYIKIRDIKKINRKKYNLTTTLVQQIYEDGDFDLRIKDLSIKTEAAREISETIPMETEEIDVKSLEPINEIEVKAETANNEIFFEAFDDHFSDEDDKALSEVYVERKEVPQIKKKKVKVVRKVKQKKVEEDDDPDTATDRYKTNEIKRRRNVEFDESLFTITSLTYDEQIEEILKRKESYNYTSAPFKCTVCYRGFQIKDRFTAHCVRHTEHCGAYECFICKTRLKTSRALRKHLTAQHTEQYSCKGCPFVTRNRGVAREHEKWHGGTKYQCPHCASSFDKITTYMGHIRIKHVSDFVCELCGYTFVSEKGIAVHKKKKHRVDKELTLEGPYCETCDVKFLDEEAHERHLKLSARHSSDHDPNRIRNDSQSMNAERNGRVMRRIERRPVIHPRPTSDSDQQDPQTPVNCEQCGIQLRDLRVYAQHFRRMHPDKNRTKYPAMKTPCMCEQCGKIFQSMALLKDHMWVHTGEKRFKCDRCTKSFTQKTNLVFHMRVHSASRPSYECPLCGKHFAFFNNRRRHMFIHTGLKPFKCDTCGKSFTTAGEQRAHVEHVHMKKPWPKRARTRHRDWKCGEPGVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01533162;
- 90% Identity
- iTF_01533162;
- 80% Identity
- iTF_01533162;