Xrho032470.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970784.1:6441597-6464130[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 10 7.8 0.8 1 23 371 393 371 393 0.98 2 11 0.0099 1 11.0 8.6 1 23 400 422 400 423 0.93 3 11 0.92 94 4.8 2.2 1 23 427 449 427 449 0.97 4 11 0.1 11 7.8 2.0 1 23 454 477 454 477 0.97 5 11 0.0038 0.39 12.3 0.2 1 23 481 504 481 504 0.94 6 11 1.5 1.6e+02 4.1 0.5 3 21 518 536 517 541 0.91 7 11 1.2 1.2e+02 4.4 0.4 2 23 598 620 597 620 0.94 8 11 0.038 3.9 9.2 0.6 2 20 636 654 635 657 0.91 9 11 2.7e-05 0.0028 19.1 1.4 1 23 663 685 663 685 0.99 10 11 4.8e-05 0.0049 18.3 4.5 1 23 692 714 692 714 0.97 11 11 3.9e-05 0.004 18.6 1.3 1 23 720 743 720 743 0.95
Sequence Information
- Coding Sequence
- ATGAGGTGCTGTGTGCCGAGCTGCAAGAATGATTCAAGACACATATCCAAATCACAGGGAATCACGTTCCATGTCTTCCCCAATGAGTCATCACTCCGCAAGGCATGGCTCAAGGCCCTCGGTAAAGACTCTTGGGAACCAAAAGAACGAAGTGCGGTGTGCTCCGAACATTTTCTATGTGAAGACTTGTACGAGACTAAGAGTGGCCTACGGAAGGTTAGGGCTGGAGCCGTGCCTTTGATAGTTCAGGATTCTTCGAACTGTGACTATGGAGAACCTGCCAGTTTGAAGGTTTGCAGAATCTGCTTAGTAATGGACGCAAAGTTAATATCAATCAGGATCTATAAACTGGAACAGGCTTATCAGAATCTCACTGGAATATCGCTTTGTGAAGAAGACAAATTACCACAGAAGCTATGCATGGAATGTGTCCAAAGGTTGATGAATTGCAGTCGGTTTAGACACAAGTGTTTACGAGCCAACTCGCTCATGCTAGAAGTTATTAAGAAACAGGATTGTTTGACCATCCAGAACATTAAAACCATCAATCGGTTAAACAACCAACTAACATCAACgttatcacaaaaacatttcgaTGTGAACCACTACGACTCATTCATAGACAATAATTACGACAACCAACCAATAGAAGTACACGATAAATCCCCACCAACACACAATGtagatataaaagaagaaaacgaAATCTTTCTTAGAGATGATATTTCAGACAAAAATGACGGATTTAACGATGACGGAGTTAAAGAAACCGGAATTACGGATGTGTTAGAAAAAGATGACGTTTCAGAAAAAGAATATGTGTTGTCTGACAAAGATCTGAATTATTCCTCAGACGACAGTCTACCTTTGGAGAAGTGTAAGAcgaaaaaaactagaaaaagaaaagagaaagaGAAAAAACCGCTAAAAACGGTAAAAAGGgttaaaaagataaaagatCCGGCTGAACCGAAGATAGATCGTCGGAAAAAACCGTTTTTAAACGACGATTTGAACGAAACTCTTTTTATAATTACTGATTTGAGTTTCGAAGAGCAAATTGCTGAAATTGTGAAGAGGCAGGACAGTTCGAATTATAAGAATTCTGTTTTTAAATGTACGGCGTGCTTTAAAGGGTTTTTGGATGAAGATGCCTATAATAGTCATATGACAAGGCATACTGATCAATGTGGCGAACACGAATGCGAGATCTGCAAGACGCACTTCAAGCACCCGCACGCGCTGCGCAAGCACGTGACCGCGCACCACTCGCAGCGCTTCAGCTGCAAGCAGTGCGCCTACGTCACCACGCACCGCCAGACCGCGCGCCTGCACGAGCGCTGGCACAAGGGCACCAAGTACAGGTGTCCGCACTGCCAAGATGAATTCgtTAAATTCACGACGTACATGGGTCATATCCGGATCAAGCACCCTTCCGACTTCGTCTGCGAGTTGTGTGGCTACTCCTTCGTGAGCGCTAAAGGCATAGAACTGCACAAGAAGCTTAAGCATCGCCTGGAGAGTGTGCAGATACCAGAAGATGGTCCGCTGTGTGAACTGTGTAACGTTCGCTTCGTGTCTTCAGAGGCTCACAAACGGCACCTGAGCGTCTCAGCTAGACATAACAcagGTACCGACAAAAATTCAAGAGAATCAAATAAACCTAAAAAGGGCAGGAAATCTAAGGAATCGAAGGAATTAGAACGAAGGGCGCGAGAAAAGGACAAAGAAGATACCGATGAAAAGAGACGGATATATCCCAGTCAGATGCGCAAGGCGGAGGGGCCTATCCCTTGTGAACAGTGTGGTATGCAACTTGAAGACTCCCGGGCGTACCACGGCCACTTCCGACGGATGCACCCGGACAAGAACAGGACAAACTACCCCTCCATGAAGTCACCCTGCATGTGCGAAGTCTGCGGGAGAATATTCCAAaGCTTCGCTCTCCTAAAAGACCACACATGGGTCCACACAGGCGAACGGCCGTTCAAATGCGACTCCTGTGGCAAATCCTTCAGAATGAAACAACGACTGGTCGCTCACAGGCGGGTACACAGTCAAGTGCGAGCGAGCTACGTCTGCGCGTTGTGTGGCAAGCACTTCTCCACGCATAGCAACCGACAAAGGCATATGTTTatacacACTGGCTTAAAACCGTTCAAATGTGAGATGTGTGGCAAAGGCTTCAAGCACGCGAGTGAGAAGCGAGCTCACATCACTTACGTACATCTTAAGAAACCGTGGCCGAAGCGAGCGCGAGGGAAGCGGAGACCTGACACTAGACAGggtCAGCTTGCACCACAAGACCAGGACATTGACATGCAGGCTCCCATGTGGCCTCCTTGCGACCCCAAGATGGGTGAAATGGGCCCCATGATCGAAGATAAACCAGtctattataacttaaaaatttAA
- Protein Sequence
- MRCCVPSCKNDSRHISKSQGITFHVFPNESSLRKAWLKALGKDSWEPKERSAVCSEHFLCEDLYETKSGLRKVRAGAVPLIVQDSSNCDYGEPASLKVCRICLVMDAKLISIRIYKLEQAYQNLTGISLCEEDKLPQKLCMECVQRLMNCSRFRHKCLRANSLMLEVIKKQDCLTIQNIKTINRLNNQLTSTLSQKHFDVNHYDSFIDNNYDNQPIEVHDKSPPTHNVDIKEENEIFLRDDISDKNDGFNDDGVKETGITDVLEKDDVSEKEYVLSDKDLNYSSDDSLPLEKCKTKKTRKRKEKEKKPLKTVKRVKKIKDPAEPKIDRRKKPFLNDDLNETLFIITDLSFEEQIAEIVKRQDSSNYKNSVFKCTACFKGFLDEDAYNSHMTRHTDQCGEHECEICKTHFKHPHALRKHVTAHHSQRFSCKQCAYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLESVQIPEDGPLCELCNVRFVSSEAHKRHLSVSARHNTGTDKNSRESNKPKKGRKSKESKELERRAREKDKEDTDEKRRIYPSQMRKAEGPIPCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRIFQSFALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQGQLAPQDQDIDMQAPMWPPCDPKMGEMGPMIEDKPVYYNLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038854;
- 90% Identity
- iTF_00746209;
- 80% Identity
- iTF_01533120;