Basic Information

Insect: Xestia rhomboidea
Gene Symbol: -
Assembly: GCA_963853795.1
Location: OY970779.1:5682752-5683900[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.019 1.9 10.1 3.8 1 23 160 184 160 184 0.92

2 7 6.5 6.6e+02 2.1 0.2 2 23 190 210 189 210 0.80

3 7 2.5e-06 0.00025 22.3 2.2 1 23 216 238 216 238 0.98

4 7 6.9e-05 0.0071 17.8 1.6 1 23 244 266 244 266 0.99

5 7 3.9e-06 0.0004 21.7 1.2 1 23 272 294 272 294 0.98

6 7 6.7e-06 0.00068 21.0 0.9 1 23 300 323 300 323 0.97

7 7 1.7e-05 0.0018 19.7 1.5 1 23 329 352 329 352 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.019	1.9	10.1	3.8	1	23	160	184	160	184	0.92
2	7	6.5	6.6e+02	2.1	0.2	2	23	190	210	189	210	0.80
3	7	2.5e-06	0.00025	22.3	2.2	1	23	216	238	216	238	0.98
4	7	6.9e-05	0.0071	17.8	1.6	1	23	244	266	244	266	0.99
5	7	3.9e-06	0.0004	21.7	1.2	1	23	272	294	272	294	0.98
6	7	6.7e-06	0.00068	21.0	0.9	1	23	300	323	300	323	0.97
7	7	1.7e-05	0.0018	19.7	1.5	1	23	329	352	329	352	0.96

Sequence Information

Coding Sequence: atgTCGCTGTCTATGTTACtgttaaaaatgttacattgcaAACAGATGAATGGCAGAAGTTCCAGCACAGGGGAGGGCTCAGCCGGCATTATCTCACTCAACGAAAACTCACGAGGAAAAATAAGCATAAAGAAGGAACAGAACGATGAAAGCGTATGCAGGGTTTGCCTCAAAGAAGGTTGCATACCAATCTATGGGAACAACACAGCACAAGACCTTTCTGAATCGTTCAACACATTTGCCGGCGTAGAAGTAAAAATAGATGACCCGTATCCTAAGTATTTATGTGAACCATGCAACACTCTTCTTCAAGGAGCAATCCTATTTAGGAAAACTGCACATCAGTCAGATGAAATTCTAAAACAACCTCCTGAAGACTTGCAAACTACTGATAATGATGAAACATTTGATTACCCTGAAGACGACGACGACAACTCTTCAGAATATGAAGAATGCAAAAGCAGTTTAAAGAGGTCATATCACtgtaaaaaatgtgaaatatcATTTGAATCATTCAGTGACTACCATGATCACAGATTGACAGAAGAACATGAGAATAGGAAAATTGTGTGTCCTGTATGCAACAACTTGTACTCAGAGTTGTATTTCAAAAAGCATTTAGCATTACACAAAGAGAAGGCTTTATACATGTGTGATATTTGTGGGAAAAACTTCATAATGCAGGGACACTTCACAAGACACCGTCTAACACACTTTTACAAACTACCCTTCAAATGTTCTCTTTGTCCGTATAGAGGAAGGTTCAGTGAGTCACTGAAAATGCACATGCgcacacacactggtgaaaaaccatACCAATGCACACAATGCCCTGCCCGATTTATTAGTAAAAGCAATTTAAACAAACACTCCTTGAGACATAAGGGAGAACATGATTTTAAATGTGAGACTTGCGGGCGAGGCTTCTATACAAAACGAGAATTGGAGTTACACTATAAAGTAGATCATACTGGGATAAAGGACCATGTTTGTAATATTTGTGGGAAAGCATTTGGTTATAGAAAGCAGATGATGAAACATCAACTCAAAGTACATAAGAGAGCAAAACTCAAAAGTGGTAGAATGCCTTTGTATTTGCAAGTGGAAACTATGAAGGAACGGGGCCAAGATATTTCTATTGAGAGTTGA
Protein Sequence: MSLSMLLLKMLHCKQMNGRSSSTGEGSAGIISLNENSRGKISIKKEQNDESVCRVCLKEGCIPIYGNNTAQDLSESFNTFAGVEVKIDDPYPKYLCEPCNTLLQGAILFRKTAHQSDEILKQPPEDLQTTDNDETFDYPEDDDDNSSEYEECKSSLKRSYHCKKCEISFESFSDYHDHRLTEEHENRKIVCPVCNNLYSELYFKKHLALHKEKALYMCDICGKNFIMQGHFTRHRLTHFYKLPFKCSLCPYRGRFSESLKMHMRTHTGEKPYQCTQCPARFISKSNLNKHSLRHKGEHDFKCETCGRGFYTKRELELHYKVDHTGIKDHVCNICGKAFGYRKQMMKHQLKVHKRAKLKSGRMPLYLQVETMKERGQDISIES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038157;
90% Identity: iTF_01062212;
80% Identity: -