Xrho028523.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970779.1:6894576-6911215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00038 0.039 15.4 1.5 1 23 267 289 267 289 0.98 2 13 0.095 9.7 7.9 3.8 1 23 297 320 297 320 0.93 3 13 0.89 91 4.9 0.4 1 23 324 347 324 347 0.90 4 13 0.0016 0.16 13.5 3.4 1 23 422 444 422 444 0.99 5 13 0.00012 0.013 17.0 2.7 2 23 453 475 452 475 0.96 6 13 2.2 2.2e+02 3.6 6.7 1 23 479 501 479 501 0.98 7 13 0.00052 0.054 15.0 2.2 1 23 506 529 506 529 0.98 8 13 4.4 4.5e+02 2.7 4.8 3 22 535 554 533 556 0.81 9 13 0.47 48 5.7 0.1 1 20 575 594 575 596 0.94 10 13 0.054 5.5 8.7 0.2 2 23 642 664 641 664 0.94 11 13 2.9e-06 0.00029 22.1 0.9 1 23 673 695 673 695 0.98 12 13 0.0016 0.17 13.5 0.8 3 23 703 723 701 723 0.96 13 13 8.1e-06 0.00082 20.7 2.7 1 23 729 752 729 752 0.98
Sequence Information
- Coding Sequence
- ATGTACAATCTGAAAGCTTGTATGGTGTGTTTCAGCACAGATGTTAAGTTATTTAGCATGAACCGTGGTAAATTACGACATGAATTCCATTTGATTTCTGGTCTAAAGACTTCACACGGAGATGGCATGCCagattatttatgttttcagtGTGCAGCGGTTGTGCGAAATTTCAAAAGATTTCGCGAAAAGTGTCACCGAGCTCATTATGCTTTGAAGGAAATTTTAAGCAGAAACAATgagATTAGTCAAGCAAATCTTGAAGACTTAAACCACAACCACCTTGGTATCATGCCGCTCCTATCGTACATGAATTTAGATAAAACTCGCTATGAAAAAGTGGCCTTTCAATGGAAAAAACAAAACCGTATTGATTGGTGTAATTCTTCCAAACATCAAATACCTGTACTTCACTGCAGTACGCTCACTTCTGATTTCACCTTCGATGGAATAACAAATCCTAATGAGTTGGAATTTACTgaagataaaatcaaaacagACATTGAAGAAATGGAACAAGAGGAAATACCGGTTGAGTATGAAGTAGCCAAAGACGAGTCTAGTGTCTTTGCCTGCGGAACAGAAGACTCTGAAATACCAGATACATTCTTGGATAATGACAATTTTGATAGTGATCAGGATGTTGACAAATTCCCTGAGTTATCATTATCTTTTaatgctgacaatacggctGTTGATGGGACTGATATGGACGAAGAATACGCCACATTGATCCCAATTTCTGTGAAAGAGGCTAAAGCTGCGATTGAGGTATACAAAATGTTCACACAGGGTAAATACCATTGTGAGATTTGCAATAAGGCTTATAACAATGAGGAAAGGATGAAGATACATTTACGGATGCATGATAAGCATGTAAGTGGCAACTACCATTGTGGACTCTGCCAGTACTACTATAAAAccgagtttttattaaaaacccaTATGACCGATAAACATCTGTTTAAGTATTTGTGTAGAAAATGTCCTGAAGTCAGTTTTGatagATCATCAGCAAAACAGCACTACATCTGGACTCATTTACAAAACGGCAGCAAAAAGAACGCAAACTGGTACGAATCACGTCCGAAATGGTTGCAAACACGCGGAGGCAAGCGTGTCAAAGGAGTTGTTACCTTAAAACCTGTTAAAAAGAATAGGAAATTGCCTGAAGACTTCCTCATCTACTCCCCTATTGGCCATGAGGAACAGTACCGATTGGTCCAGGAAAGGCAGCAGTCACGGAACTTTCAGTCAGCGAGGTATCAGTGTGATAAGTGTTACCGAGGGTTCCGGGGTATGCAGACGTATAATAAGCATATGAAGAAACATGACCCTACACAATCAGGTCCCTTGCAGTGTGATATCTGCAAGATCCATTTCAAAGATCAGAGGAAGCTCTACAAACATATGAACATCACTCACTTGTTCAAATACTCCTGCCAGCTATGCAGCTATGTGTGTTGTAATAGAGGTCAAGCTCATATGCATTATAGATGGCATAAAAACGTGACATACGAGTGTCCTCATTGCAAGAAGGAATTCATGAAGGCTTCAACGCGTTTAACTCATATAAGAATAAAGCATCCGTCCATGTGTCTATGCACTATTTGCGGACACAGTTTTGTGAGCGATTCGGGCTTGTATTGTCATAAACAACTCACTCATACTGAAGAGGAAATAGAACAAAGCAACAAGATGGTGTTGAACACCGCCGACCCTCATTACTGCGCCGACTGCGAGATCCAGTTCATGTCGCTCGCTGCCTTCACCACACACCTGGGCAGCTCATACAAACATGCTACTACTAACCTTTCTATCAAGCCGTCGCGTCGCACGAAGTCCGAGGAGCCTCGCGGGCGAGGTCGACCGCGACGCGGCGCCTGCTCCGAGATCGTCAACAACGGACTCACCACCTCTAGCACTTGTGAAGTGTGCGGCAAGTTCCTATCAAACGACGTGCAGGCCCGCAAGCACTACGAGTCTGAACACCCCGACACCGAGTACCTCAAGCGCTACATGTGTGACGTCTGCGGGCATACCACCAGGCAATACGCGAACCTGATAGTACACATGCGAACACACACGAATGAGAAGCCGTACGGATGTCCGCACTGTGACCGACGGTTCAACATGCCCAGCAACAGAGACAGACATCTTGTCGTCCACACCGGTGAGAAGCGGTTTCAATGCCAGCATTGCAACCGTCGCTTCACTCAGAGCAGCGCCGTCAAGCTGCACATACAGACCGTCCACCTCAAGATACCTTACGCGCCCTGGAATAAAAAGAATCGGAAACGACGCAAGGAGTTGGAGACAGCTGGTATGTCGACTCCGCTGATATTGCCGCCTCCAAACAAGTTGCTCGCTTACGAAGCGCAAGCGCCCGCAGATTACCTCAACGCTTACATCACATATAATGACGACTAA
- Protein Sequence
- MYNLKACMVCFSTDVKLFSMNRGKLRHEFHLISGLKTSHGDGMPDYLCFQCAAVVRNFKRFREKCHRAHYALKEILSRNNEISQANLEDLNHNHLGIMPLLSYMNLDKTRYEKVAFQWKKQNRIDWCNSSKHQIPVLHCSTLTSDFTFDGITNPNELEFTEDKIKTDIEEMEQEEIPVEYEVAKDESSVFACGTEDSEIPDTFLDNDNFDSDQDVDKFPELSLSFNADNTAVDGTDMDEEYATLIPISVKEAKAAIEVYKMFTQGKYHCEICNKAYNNEERMKIHLRMHDKHVSGNYHCGLCQYYYKTEFLLKTHMTDKHLFKYLCRKCPEVSFDRSSAKQHYIWTHLQNGSKKNANWYESRPKWLQTRGGKRVKGVVTLKPVKKNRKLPEDFLIYSPIGHEEQYRLVQERQQSRNFQSARYQCDKCYRGFRGMQTYNKHMKKHDPTQSGPLQCDICKIHFKDQRKLYKHMNITHLFKYSCQLCSYVCCNRGQAHMHYRWHKNVTYECPHCKKEFMKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQLTHTEEEIEQSNKMVLNTADPHYCADCEIQFMSLAAFTTHLGSSYKHATTNLSIKPSRRTKSEEPRGRGRPRRGACSEIVNNGLTTSSTCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRFQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLILPPPNKLLAYEAQAPADYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301697;
- 90% Identity
- iTF_01534248;
- 80% Identity
- -