Xrho033912.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970786.1:6753771-6759585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 20 6.9 1.4 1 21 330 349 330 351 0.88 2 10 1.5 1.5e+02 4.2 0.1 2 23 377 399 376 399 0.93 3 10 0.031 3.1 9.5 0.1 2 23 422 443 421 443 0.96 4 10 6e-06 0.00061 21.1 1.5 1 23 447 469 447 469 0.98 5 10 0.00072 0.073 14.6 0.2 1 23 474 497 474 497 0.97 6 10 0.048 4.8 8.9 0.2 2 23 505 527 505 527 0.93 7 10 0.00063 0.064 14.8 0.2 3 23 536 557 534 557 0.96 8 10 0.00046 0.047 15.2 0.2 1 23 563 585 563 585 0.96 9 10 0.00014 0.015 16.8 1.6 1 23 591 613 591 613 0.97 10 10 0.0038 0.39 12.3 2.3 1 23 619 642 619 642 0.95
Sequence Information
- Coding Sequence
- ATGTCGGAAGAAAAAACTGAGATAGAGACGTTTTTCGGTAGATGTAGGTGTTGTCTTTCTTATGGCTACTTAAAAAACATGTGGATAGAACATCGATTTGAAGGAGATGCCGAAATCTACGGGGAGATGCTTGTCCAATGTTTTGCTCTGACCTGGGAACACACAGAGGACTCGATGGAACAAGATCAGATTTGTGAGCAGTGCATCTGCCGGTTAAGAGATGCAAACGACTTTAAGAGAGTGGTCTTGGACTCGCAGGAGGAGCTGATACAGCAGATTGATGCTGAAAACGATCTGACCATCAAAGAAGAACGACTAGACCGGGACTTCCTCGATGATTACAAACATGCTGTGAGTGAAGACACTGCGGACACTGAATACACAATGGATACTGCTGACCCTGCGAGTGTTAAAGATGAGACGGAATATGAGGAAGTTGAGTATTTGGAAGATGAGGATTTTGGGGGAAATAATGATGCTGCCATTGGTACGGACTCCTCGCAAATCACAGATCAGTCGAAACCAGTAAAACGACAGAAACAACCCCGCCAACTAACcccagatgatgatgacactccAAAGCCCAAATGGCCGaagaaactacccaaatcggAACGCCACAAGACATATAAGCAATACTCTGAAGTCGATTTGAGGAAGTGTTTAGAAGAAGTCAGGAACAATGTCTTGACGGCTGGGGAGGCGTCGCTGAAGTATGATATACCGAAGAAGACCATCTGTTCCAAGATTAAAGTGGATCCTAATGATGTCGGGACAGACTCTACAAACAAAACTACCCGCAAAAATGTGACAACGAGCCAAACGAAGGAACCTACACAATCACACGAAGAAGCTAAAGAGACAGATTCCGAAATAGAGAACCAGGACATACCAAACAAATTCCCAATGCTTAAACATAAGCACAATCTTAATATGATACTGAAATACTCTAACGCTACACTGATCAAGAGTAACTCAGCCGCTGGATATTCCTGCTGGTTTTGCGATAAACAATTTGTTCCAGAAAAACTGAAACAACACAACTTTGAGCACGAAGATATGTACCATGATGCTATTAAAGTCCAATACGTCTCGGACCTTATAATCAAACTCGATATTACTGGACTCGAATGCAAACTATGTGAAGAGATAATCGACAgtcttgaaaaattcatgaatCATCTCCAAGAAGATCATGATAAAACAATCTATACGGATATAGACAACCATTTCATACCTTTTAAATTTGATACAGACGAGTTACAATGCGCAATTTGTGCCGCAGAATTCAAATATTTCAAGTTACTAACAGAACATATGTCGGAACATTATAGCAACTACAAATGTCCGGATTGCGACCGCGTctttataaacaaacaatcaaTGCAGACTCATCGATACAGACATAAAAAAGGAGAATACAAATGTTCGCTATGCCccaaaatctttgacagtcttgtTAAAATGCGAGAACACGAACGTGTAGTTCACAGACTAGCTAATAAGAAGAGAAAATGTGGTTTTTGCGAGGAGAAATTCACGTCAGCGGAAGCAGTAAGAAGTCATGAAGCTAAAGAACACGGTGTTACCAGACCTCTGCTGTTTTGCGCAGATTGTGACAGCCCTTACTCAAGCCAGAAAAGTCTTACAGTTCATATAAAAAGGGACCATATGTTGTTACGTCCTTTTGTGTGCGAGCCTTGTGGTAGATCATTTTATACCCGTCAGGAATTGACCTGGCATTCTGCAACCCATTCGATAGCCAGAGAATTTCATTGTGATCAGTGTGATAACTCTTTTCGCACTAAACCTGCGCTGTCTCAGCATTTAAGGGCTCATAAGGGTTTCAGAAAATATAAGTGTGAATTTTGTAGTCAGGCGTTTGTGCATATGAGCACTTGGAAAAGGCATGTCTTTATGCTACATGGAGAAAAAGCTGTGAGTAccagaaaaaaaagattaaGTAATGCTCAATAA
- Protein Sequence
- MSEEKTEIETFFGRCRCCLSYGYLKNMWIEHRFEGDAEIYGEMLVQCFALTWEHTEDSMEQDQICEQCICRLRDANDFKRVVLDSQEELIQQIDAENDLTIKEERLDRDFLDDYKHAVSEDTADTEYTMDTADPASVKDETEYEEVEYLEDEDFGGNNDAAIGTDSSQITDQSKPVKRQKQPRQLTPDDDDTPKPKWPKKLPKSERHKTYKQYSEVDLRKCLEEVRNNVLTAGEASLKYDIPKKTICSKIKVDPNDVGTDSTNKTTRKNVTTSQTKEPTQSHEEAKETDSEIENQDIPNKFPMLKHKHNLNMILKYSNATLIKSNSAAGYSCWFCDKQFVPEKLKQHNFEHEDMYHDAIKVQYVSDLIIKLDITGLECKLCEEIIDSLEKFMNHLQEDHDKTIYTDIDNHFIPFKFDTDELQCAICAAEFKYFKLLTEHMSEHYSNYKCPDCDRVFINKQSMQTHRYRHKKGEYKCSLCPKIFDSLVKMREHERVVHRLANKKRKCGFCEEKFTSAEAVRSHEAKEHGVTRPLLFCADCDSPYSSQKSLTVHIKRDHMLLRPFVCEPCGRSFYTRQELTWHSATHSIAREFHCDQCDNSFRTKPALSQHLRAHKGFRKYKCEFCSQAFVHMSTWKRHVFMLHGEKAVSTRKKRLSNAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064066;
- 90% Identity
- iTF_01532419;
- 80% Identity
- -