Xrho033871.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970786.1:6331633-6334898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 1.3 10.6 0.9 1 23 63 86 63 86 0.91 2 19 0.45 45 5.8 0.1 2 23 113 135 112 136 0.94 3 19 0.011 1.1 10.9 2.1 1 23 157 179 157 179 0.98 4 19 0.0074 0.75 11.4 0.6 1 23 183 205 183 205 0.98 5 19 1 1.1e+02 4.6 1.8 1 14 210 223 210 224 0.92 6 19 0.0061 0.63 11.7 3.1 2 23 241 263 240 263 0.95 7 19 0.00032 0.033 15.7 1.1 1 23 270 293 270 293 0.97 8 19 0.00015 0.015 16.7 5.7 1 23 299 321 299 321 0.97 9 19 0.25 25 6.6 0.1 1 13 327 339 327 341 0.92 10 19 0.017 1.7 10.3 0.7 1 23 410 433 410 433 0.92 11 19 0.03 3 9.5 0.0 2 23 460 482 459 482 0.96 12 19 7.6e-05 0.0077 17.7 0.8 1 23 504 526 504 526 0.99 13 19 0.0013 0.13 13.8 0.5 1 23 530 552 530 552 0.97 14 19 1.9 2e+02 3.8 3.0 1 14 557 570 557 580 0.89 15 19 0.038 3.9 9.2 3.1 2 23 588 610 587 610 0.90 16 19 0.00013 0.013 16.9 2.4 2 23 618 640 617 640 0.95 17 19 0.00095 0.097 14.2 1.6 2 23 647 668 647 668 0.97 18 19 8.2e-06 0.00084 20.7 2.5 1 23 674 696 674 696 0.99 19 19 9.5e-05 0.0097 17.3 2.9 1 23 702 725 702 725 0.98
Sequence Information
- Coding Sequence
- ATGAAAGCGATCAAAACCCCAAGATCTGCAAAAGCTATCCACAGTCAGGAGCTCAAAGAAAACTTATTAAAAGTTTGCTCTCCTAAAGCAAAAAACACAAGAGAGATGGACAAACATTTGCAGAATATTCGAAATATTCTCTTTTATTCGAACGCTACTCCTATCAGAAAACAGACAGGGCATGGTTATTTATGCGCCTTCTGTTCAAAATGCTTTGCTTTACCGGAAGACCTCAAACTACATACACTAGAAAATCATGACAACCAATCTAAAAGCCGTTTTATGAAAGGCTGCCTCATCTTTAACTACGTCGTTAAACTAGACATCACTGGTCTGCAATGTCAAATATGCGACGAAGATATTGACGGATTAGAAACACTTATGGATCACTTACAATCTGTACACCACAAAATCATACATAGAGACATCCCAAATCATATTTTGCCTTTCAAACTTGAAGGTAAAACGTTTAGGTGCGTCCTATGCCCTATGTTCTTCGACTACTTCAAGATGCTACAGGAACACATGCATGTACACTACTCCAATTACAACTGCGAAGTTTGTAACTCGCCTTACCTCAACAAGAGAAACTTAAAAAGTCATATGGCCCGACACAAACAAGGGGATTTCTCTTGCAGGTTTTGTCAAAAAGTGTTTGACACAAATAGTAGAAAACTATGCCACGAAAAATTCACACATACTCATGGCCAGAAACGAAATAAGTGTCCACATTGTAATGAGAAATTCAGTAGCCACGCTCAGAGAAATGAACATATCGTAAAAGAGCATGGCGCAGAACCTCTCGTCTTCAAATGTTTAGCCTGTGACAAGGACTACGCTTCCAAAGAAACGTTGACTCGACATACAAAACGGGATCACTTGCTTGAAAGGAATCACGAATGCCAGCACTGTGATATGAAGTTCTTTAGGAAGAAGGAACTGAATGTACACATGTTAAAACACACAGGCGTGAGACGTTTCAGTTGTGATATATGTTTGAAGACCTTCGCTCGAAACGCACCGAGACGTACACGAGCAAACGACAACAAAGTTGATTGGACAGTAACGGTCGCTAAAAAAGGTAGATTTCAGGCGATCAAAGATGAAATAATAAGTGTTCGACCTCTTAAGGAAGACAAAAGAGAGATAGATAAACATTTGCAGAATATTCGTAATATACTCTTATTTTCTAATGCTACCCCCATCAGAAGTTACACAGGAAATGGTTACGTGTGCGCGTTTTGTCCAGAGCACTTTAACATGCCCACAGACCTTAAAATACATTCACTGCAAAAACatgacaataaaacaaaaagcacATTCATGGAAGGCTACTCGTTAAGTTCCTACGTAGCTAAAGTAGACATAACTGGTCTGAAATGTGAAATATGCGGTCAAGATATTGATGGATTAGAACAACTGATGAGTCATTTACAAACTGAACACTATAAAATTATACACACAGATatcaaaaatcatattttgccttttaaTCTAGAAGGGGACACGTTCAAGTGCGTGCTATGCCCTAAAATTTACGAACGCTTTAAACTTCTCCAAGAGCATATGAATACACactataacaattataattgtgAATCCTGCAACTCTCCGTTTGTAAACAAGAGAACCCTTAACAGTCATATAGCTCGACATAAGCAAGGAGACTTCTCTTGTTCTTTCTGTTCTAAAGTATTTGATACAAATGGCAAAAAATTATGCCACGAAAAATTTGTACACATAGGAGATCACAgacgaaacaaatgtccacattGCCACGAAAAATTCACGACTTACGCGAAGAAAAGTGAACATATGGTGGAGGAGCATGGTGCAAGCCCTCGTGTCCTCAAATGTATGGCCTGTGACAAGACGTTTACAAGACGAGACAGATTGACTCGACACACTAAACGGGATCACTTACTTGAAAGGAAAAATGAATGCGTGCACTGTGAtatgaaattttatgcaaagaAAGAACTGAATATGCATATGTTAACACATACAGGCGAAAAACAGTACAGGTGCGATATCTGTTTCAAAGCTTTTGGACGGAAGCATACATTAAGAGAGCATTTAAGAATTCATACGGATGACAGGAGATTTAAATGTGCACAGTGTGGTCAGGCATTTGTGCAGAAATGCAGCTGGAAAAACCACATGAAATCGAGACATGATGAATTGGTTTGA
- Protein Sequence
- MKAIKTPRSAKAIHSQELKENLLKVCSPKAKNTREMDKHLQNIRNILFYSNATPIRKQTGHGYLCAFCSKCFALPEDLKLHTLENHDNQSKSRFMKGCLIFNYVVKLDITGLQCQICDEDIDGLETLMDHLQSVHHKIIHRDIPNHILPFKLEGKTFRCVLCPMFFDYFKMLQEHMHVHYSNYNCEVCNSPYLNKRNLKSHMARHKQGDFSCRFCQKVFDTNSRKLCHEKFTHTHGQKRNKCPHCNEKFSSHAQRNEHIVKEHGAEPLVFKCLACDKDYASKETLTRHTKRDHLLERNHECQHCDMKFFRKKELNVHMLKHTGVRRFSCDICLKTFARNAPRRTRANDNKVDWTVTVAKKGRFQAIKDEIISVRPLKEDKREIDKHLQNIRNILLFSNATPIRSYTGNGYVCAFCPEHFNMPTDLKIHSLQKHDNKTKSTFMEGYSLSSYVAKVDITGLKCEICGQDIDGLEQLMSHLQTEHYKIIHTDIKNHILPFNLEGDTFKCVLCPKIYERFKLLQEHMNTHYNNYNCESCNSPFVNKRTLNSHIARHKQGDFSCSFCSKVFDTNGKKLCHEKFVHIGDHRRNKCPHCHEKFTTYAKKSEHMVEEHGASPRVLKCMACDKTFTRRDRLTRHTKRDHLLERKNECVHCDMKFYAKKELNMHMLTHTGEKQYRCDICFKAFGRKHTLREHLRIHTDDRRFKCAQCGQAFVQKCSWKNHMKSRHDELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01535152;
- 90% Identity
- -
- 80% Identity
- -