Basic Information

Insect: Xestia rhomboidea
Gene Symbol: -
Assembly: GCA_963853795.1
Location: OY970765.1:14223822-14229887[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0014 0.14 13.7 3.7 1 23 90 113 90 113 0.97

2 12 0.0044 0.45 12.1 2.8 1 23 120 142 120 142 0.95

3 12 4.5e-05 0.0046 18.4 0.4 2 23 149 170 148 170 0.96

4 12 3.6e-07 3.7e-05 25.0 0.2 1 23 176 198 176 198 0.98

5 12 1.3e-05 0.0013 20.1 0.8 1 23 207 229 207 229 0.96

6 12 3.2e-05 0.0033 18.8 1.4 2 23 236 257 235 257 0.96

7 12 0.00054 0.055 15.0 7.5 1 23 263 285 263 285 0.98

8 12 1.6e-09 1.6e-07 32.4 0.6 1 23 291 313 291 313 0.99

9 12 6.9e-06 0.00071 20.9 1.0 1 23 319 341 319 341 0.98

10 12 2.5e-07 2.5e-05 25.5 1.1 1 23 347 368 347 368 0.98

11 12 6.6e-05 0.0068 17.8 1.9 1 23 374 396 374 396 0.99

12 12 0.001 0.11 14.1 2.3 1 23 402 424 402 424 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0014	0.14	13.7	3.7	1	23	90	113	90	113	0.97
2	12	0.0044	0.45	12.1	2.8	1	23	120	142	120	142	0.95
3	12	4.5e-05	0.0046	18.4	0.4	2	23	149	170	148	170	0.96
4	12	3.6e-07	3.7e-05	25.0	0.2	1	23	176	198	176	198	0.98
5	12	1.3e-05	0.0013	20.1	0.8	1	23	207	229	207	229	0.96
6	12	3.2e-05	0.0033	18.8	1.4	2	23	236	257	235	257	0.96
7	12	0.00054	0.055	15.0	7.5	1	23	263	285	263	285	0.98
8	12	1.6e-09	1.6e-07	32.4	0.6	1	23	291	313	291	313	0.99
9	12	6.9e-06	0.00071	20.9	1.0	1	23	319	341	319	341	0.98
10	12	2.5e-07	2.5e-05	25.5	1.1	1	23	347	368	347	368	0.98
11	12	6.6e-05	0.0068	17.8	1.9	1	23	374	396	374	396	0.99
12	12	0.001	0.11	14.1	2.3	1	23	402	424	402	424	0.97

Sequence Information

Coding Sequence: ATGATAGTGTACGATGTTGTTTACGAAGACGCGGGGCGTGAAGATGCGCGTGCGAAGACGACGCCGCGTGCTCTGTCGCGGGTATCGCTACGTTTCACACGCCGCTTCTCCGTGAACAAAGTATTAAAGAAACCTGTCTGGCCGCAAAGCCGCGTGCGCCGCCACGTTGACCGCCGCATGCGTAGCGGCTCCGCTGCAAATTCTAGCAGCTTTATAAAGGTATCAAATAAGAAACTTAGAAGAAAACCTGGGAAAAGTGAGAAATCTTTTCCATGCAGGATTTGTACAAAGAAATTCCAAAATTTGAAAGCATTCCATGCACATATGAAGAGCAAACATCCAAGCATGAGACATCTACACTTTTGTAACCAGTGCACTGAGATGTTTAACTCGGAGCATGACCTCAAAGTACATGCATCCATACACTCTAAAGGGAACACTTGGAACTGCAACCAGTGTCCTAAGGCGTTTAGAGCCCGTGCGATGCTCCGGCGGCACATCTCGCGACACATGGAGTCGAAGCGTTTCTCTTGCGAGGTGTGTGGCAAGGCGTTCACCGAACAGTACGCGTTAAGGAGACACGCGCGTGTTCACACCGGCGAGACCCTTGAGAAGAAACATGCCTGCACTATTTGTGATAAGAGGTACAGTGAGAGTGGTCTTCTCACAGCACACATGTCTCGCCACATAGGCCTGCGCCCTTGCGAGTGCAGTATCTGCGGCAAACGCTTCCCATCGAACCGACTGCTGTCGTCGCACCGGCTCGTCCACTCGGATCGTAAGCCGTACGCCTGCCAGTACTGCGATAAACGTTTCCGTCACGAGTCTACACGCAATACCCACCACCGTACACACACTGGAGAGAAACCTTACGTGTGTTCTGTCTGCGGAAAGAGCTTCATACAGAACTCCAACCTCACGCTGCATATGAGGACACATACTGGTGAGCGCCCGTACTCATGTTCGATCTGTGATCGCAAGTTCACTTCAGGCTCGACTCTCAAGAGCCACGAACGGATACATTCCGGGGAACGACCATTCAGCTGTGACATTTGTGGAAAAAGTTTCACGCGCAAGAACTTGAACGCGCACATGCGCAATCACTCGGGCGAGCGCCCCTACGAGTGCAGCGTGTGCTCCAAGAAGTTTGCAAACGCGACACGCCTGCGTGATCATCACCGCGTACATACAGGTGAAAAGCCATTCGACTGTTCAATATGCTCGCAAAAATTCGCTACGAAATCTCAACAGTTAAAACACTCCAAAACTCATCAAAAAAAGAAGAGAGCACAGCTGCACGCTTCAGATAAAGACAGAGAGAAAAAGAGAGAGCGAGAGAACCGTGGACTAGTCATATTACAACATGTTGAGCCTATACCTATCATCTCTGACGGAATTATGTTCAACAAGGAGCACGGAGAATTAGTAACAGTCAATGAAAATGTACTCTCAGACGAGTCGCCTGAAGATCAGTCCAAAGAACTAACCCTTAACATCGTTCAAGAAGTCCCATTAGAAGTGACAGGAGAGTTAGTACTACAGGACGATAGTAACATGAAAGAACTTTTAGTAGTTGATAATAGCCAAACTAACTACCAAGATGGAACTATATGCTTGAATGCTAGCAACGTGAATATCATCGATGACGTGAACTATGAGGGAGAGAACTTGGTGACAGTGAACGAGGGCGGGGTCAGTATTTCGACCACGAACCTAGAAGGAACCACAGTGAAACTGTACCAGTTAGACCAAAGTTTAGTGCAAATACACAGCTCCGGTGGACAAGTCACTATTAGTAAGATAACCAGCAAAATGACTgctaacttttaa
Protein Sequence: MIVYDVVYEDAGREDARAKTTPRALSRVSLRFTRRFSVNKVLKKPVWPQSRVRRHVDRRMRSGSAANSSSFIKVSNKKLRRKPGKSEKSFPCRICTKKFQNLKAFHAHMKSKHPSMRHLHFCNQCTEMFNSEHDLKVHASIHSKGNTWNCNQCPKAFRARAMLRRHISRHMESKRFSCEVCGKAFTEQYALRRHARVHTGETLEKKHACTICDKRYSESGLLTAHMSRHIGLRPCECSICGKRFPSNRLLSSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKSFIQNSNLTLHMRTHTGERPYSCSICDRKFTSGSTLKSHERIHSGERPFSCDICGKSFTRKNLNAHMRNHSGERPYECSVCSKKFANATRLRDHHRVHTGEKPFDCSICSQKFATKSQQLKHSKTHQKKKRAQLHASDKDREKKRERENRGLVILQHVEPIPIISDGIMFNKEHGELVTVNENVLSDESPEDQSKELTLNIVQEVPLEVTGELVLQDDSNMKELLVVDNSQTNYQDGTICLNASNVNIIDDVNYEGENLVTVNEGGVSISTTNLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00375561;
90% Identity: iTF_00446422;
80% Identity: -