Xrho030934.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970782.1:7724387-7726912[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-10 5.7e-07 30.2 0.0 1 35 16 51 16 58 0.91
Sequence Information
- Coding Sequence
- aTGAGTTCTTGGGAAGTTagtaagaaaaaagaaaagaaaacatacaCAGAAGAAGATTTAAAGAAAGCATTAAGTGACATTCGTGAGAAGAAAATATCGATAAGACAAATATGCAAAGAATATGCCATTCCCAAGACCACATTATTGGACAAAATCAGTGGACGCAGACCAGATGGAGTTAAGAAACCGGGACCAGAACCAGCGCTAGGAGTGGATGGTGAAAAAAAGGTAGTTGAATGGCTTCTTAATATTTCCAAATGTGGATTTCCAGTAAAAAAACAGGAATTGTTGGATACTGTTCAGAAAATAATTCGTGATGggggatttaaaaataaattcaaagatGATCGCCCAGGTCAAAAGTGGTTTGTAAAATTTTTGGCCAGAAATAATCAAGTCTCACTTAAAAATGCGGAAGGTATTAATAAAGCTAGAGCCCAAGTCACAGAAGAGTCGATCAGATTGTGGTTTAGAGAACTTGAGGAATATTTGGACAGTATACACCTAAAAGATATTTTGAATGATCCGAAAAGAATTTTTAATGGAGACGAAAGTGGATTTGCACTTTGTCCAAAGACAGGAAAAGTTTTAGGTCCAAGAGGTTTCAAGAACTTATATCAAATAAAGCCAagtaatgaaaaagaaaacttaaCGGTATTATTGACATTTAATGCGAATGGAGATATGTGCCCACCTTGTGTCGTATTTCCATACATTAGACCACCAAAGGCTGTAGTGAATAGTATGCCCCAAGATTGGTGCTTAGGCAGATCGGAGACAGGTTGGATGAGAGGAGAAGTATTCTTTGAATACGTGACCAACGAGTTTCACAACTGGGTGGTGGAAAATAACATCATAAAACCAATTCTTCTGCTGGTAGATGGGCATAAATCGCATATGTCATTAATGCTAAAAGTTGGCTTTGCAGAGATTTCTATCGAAACTGAATCTGAGAGGTCTCTTATGGAACtatcaatagaaaaaaatagtacTATTTTAGAATTGGATGCAACTAAAGAAATCTCCATCTCTTCATTTCACGTAGAAGACGAAAACATAAATGATGAAGCTAACTCCGATTCGACTGTGCAGATTCAAACAGTATCAGCCGAAATACATTCTGCACCAAAACCATCCACCAATGCCGAGCCTTGCACATCAAAAATCACCAGCAATAGAAATCTAGCTTCTTCTAAAATTTACTATGATGAAATCACACTATATCCGGATAATTCTAAAACTCTTGAtatcaacaaaaacaattcgTTCCCTGATTTGTCTCTTTCGACGTTACACCTTTCTGGCCTTGATGTTGACTCTATCGTGTCCTTAGACGACGGTCTAATTCTACCATTAGAAGACATTATATTATCAAGTCCCACTCCCACTACGTCAAATGTTGAAAAAGAAACTAAGGAACAAACGCCAGAACCGCCTCTGACCTCTTTGATTCATACAGTATCAACTGTATCGCCATCCTTCGTTTTACCTACAGAAAACTCTCCTCTAGTACAACCATCTTCAGCAGCTGTTGGCgattcaagtaaaaaaaaaacctgtgatCCATTTAAAAACCACCTGATGCTGCCTGAAATTTCTAAAGAAGCAAGAAAACCTAATAAGCAAAGGACTCCAGCAGCCATATCTTCTGCTGCATGGAGAAAGTATTACGAAGATAAAGAGCAGATCAAGAACGGAAAACAGGAAGCAATACGAAAAAGAAAGTTAGAACGAATAGAGAAAAAAGAACAGGAGAGAGCTCGAAAGGTTCAAAAAACTGCTCCGAAAGgaaaaaagaagataaaagtCACACAGGAACCGATAGAGTCAATAGATGTGGAATCTGAGAAAGAAAATGTACCAGCCGTGGAGCTAATGAAATGTGCTGAATGTGACGATGTATTAATTTCTGATGTAGAAGATGACGATGAGAAAAACATTGGCTGTGACAAGTGTATTAGATGGTATCATCTGAAATGCACGCGATTTCTAGGATTAAGTTATTCAGAAGCCAAAGATAATTCTTTTGAATGTGACTTGTGTGATTAA
- Protein Sequence
- MSSWEVSKKKEKKTYTEEDLKKALSDIREKKISIRQICKEYAIPKTTLLDKISGRRPDGVKKPGPEPALGVDGEKKVVEWLLNISKCGFPVKKQELLDTVQKIIRDGGFKNKFKDDRPGQKWFVKFLARNNQVSLKNAEGINKARAQVTEESIRLWFRELEEYLDSIHLKDILNDPKRIFNGDESGFALCPKTGKVLGPRGFKNLYQIKPSNEKENLTVLLTFNANGDMCPPCVVFPYIRPPKAVVNSMPQDWCLGRSETGWMRGEVFFEYVTNEFHNWVVENNIIKPILLLVDGHKSHMSLMLKVGFAEISIETESERSLMELSIEKNSTILELDATKEISISSFHVEDENINDEANSDSTVQIQTVSAEIHSAPKPSTNAEPCTSKITSNRNLASSKIYYDEITLYPDNSKTLDINKNNSFPDLSLSTLHLSGLDVDSIVSLDDGLILPLEDIILSSPTPTTSNVEKETKEQTPEPPLTSLIHTVSTVSPSFVLPTENSPLVQPSSAAVGDSSKKKTCDPFKNHLMLPEISKEARKPNKQRTPAAISSAAWRKYYEDKEQIKNGKQEAIRKRKLERIEKKEQERARKVQKTAPKGKKKIKVTQEPIESIDVESEKENVPAVELMKCAECDDVLISDVEDDDEKNIGCDKCIRWYHLKCTRFLGLSYSEAKDNSFECDLCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01335870;
- 90% Identity
- iTF_01134730; iTF_00923631; iTF_00923632; iTF_01335870;
- 80% Identity
- -