Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.025 17 6.3 0.0 1 15 34 48 34 50 0.93

2 3 1.6e-12 1.1e-09 38.9 0.0 1 38 61 98 61 105 0.90

3 3 6.3 4.4e+03 -1.5 0.0 33 44 168 179 168 180 0.84

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.025	17	6.3	1	15	34	48	34	50	0.93
2	3	1.6e-12	1.1e-09	38.9	1	38	61	98	61	105	0.90
3	3	6.3	4.4e+03	-1.5	33	44	168	179	168	180	0.84

Coding Sequence: ATGGGTGGGACGGCATCCGACACGACCCCTCGGACAGATCAGGCGCAGGAACAAGGCACTATTAAATGGGTAGTGAAGCATCCACGAGATGTTTTGTGGACAGAGGAAGACTTACGTGCTGCTGTGGCCGCTGTTAAGAGCGGACATTGTATTGAATTGGCTCCAAGGAGAGTAAAATGGACGGAGGAAGATATGGAAGGGGCAATAGACGCAGTAATACACGGTAACATGACACAGTGCGCTGCAGCAGAACTATTTGGCATTCCAAGACCAACACTAGCTGATCACCTGTCTAAAGGAAACATCGGGAAACGTGTGGGTCGACATTCTATAATGAACGAAACTCACGAAAAGTTCCTCGTCAGCAGACTAATAGACCTAGCTAACAGTGGAACGCCAGTCACTCCACATGTAATCTGCAAGCAAGCATTCCTTTTTTGCGAGAAGTTTAAGTTAAAGCATAATTTTAATAACGAAACTAGGCTCGCCGGGAAAAAATGGCTTAAGAGGTTCTTGAAACGACACCCTGAGGTTTCGCATTGTTTTTCTTAA
Protein Sequence: MGGTASDTTPRTDQAQEQGTIKWVVKHPRDVLWTEEDLRAAVAAVKSGHCIELAPRRVKWTEEDMEGAIDAVIHGNMTQCAAAELFGIPRPTLADHLSKGNIGKRVGRHSIMNETHEKFLVSRLIDLANSGTPVTPHVICKQAFLFCEKFKLKHNFNNETRLAGKKWLKRFLKRHPEVSHCFS

Sequence clustering based on sequence similarity using MMseqs2