Basic Information

Insect: Xestia ashworthii
Gene Symbol: RTase
Assembly: GCA_950022955.1
Location: OX465577.1:4715279-4729901[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.017 2.3 10.3 0.1 3 23 990 1011 989 1011 0.93

2 16 0.0048 0.67 12.0 0.1 2 23 1037 1059 1036 1059 0.96

3 16 0.00028 0.039 15.9 2.4 1 23 1081 1103 1081 1103 0.98

4 16 0.011 1.5 11.0 0.5 1 23 1107 1130 1107 1130 0.98

5 16 0.045 6.2 9.0 0.6 2 22 1136 1156 1135 1156 0.95

6 16 0.5 70 5.7 3.3 1 23 1163 1186 1163 1186 0.96

7 16 2.9 4e+02 3.3 0.2 3 23 1219 1240 1217 1240 0.87

8 16 4.1 5.8e+02 2.8 0.2 3 22 1268 1287 1268 1289 0.85

9 16 0.41 57 6.0 1.5 2 23 1312 1333 1311 1333 0.93

10 16 1.5e-06 0.00021 23.1 1.0 1 23 1337 1360 1337 1360 0.94

11 16 1.3 1.9e+02 4.4 0.2 3 20 1366 1383 1365 1385 0.90

12 16 0.028 4 9.6 2.8 1 23 1392 1415 1392 1415 0.93

13 16 0.0011 0.15 14.1 1.9 1 23 1424 1447 1424 1447 0.94

14 16 0.0029 0.4 12.8 0.4 1 23 1452 1474 1452 1474 0.96

15 16 0.027 3.8 9.7 3.6 1 20 1480 1499 1480 1502 0.94

16 16 0.032 4.4 9.5 3.9 1 23 1508 1531 1508 1531 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.017	2.3	10.3	0.1	3	23	990	1011	989	1011	0.93
2	16	0.0048	0.67	12.0	0.1	2	23	1037	1059	1036	1059	0.96
3	16	0.00028	0.039	15.9	2.4	1	23	1081	1103	1081	1103	0.98
4	16	0.011	1.5	11.0	0.5	1	23	1107	1130	1107	1130	0.98
5	16	0.045	6.2	9.0	0.6	2	22	1136	1156	1135	1156	0.95
6	16	0.5	70	5.7	3.3	1	23	1163	1186	1163	1186	0.96
7	16	2.9	4e+02	3.3	0.2	3	23	1219	1240	1217	1240	0.87
8	16	4.1	5.8e+02	2.8	0.2	3	22	1268	1287	1268	1289	0.85
9	16	0.41	57	6.0	1.5	2	23	1312	1333	1311	1333	0.93
10	16	1.5e-06	0.00021	23.1	1.0	1	23	1337	1360	1337	1360	0.94
11	16	1.3	1.9e+02	4.4	0.2	3	20	1366	1383	1365	1385	0.90
12	16	0.028	4	9.6	2.8	1	23	1392	1415	1392	1415	0.93
13	16	0.0011	0.15	14.1	1.9	1	23	1424	1447	1424	1447	0.94
14	16	0.0029	0.4	12.8	0.4	1	23	1452	1474	1452	1474	0.96
15	16	0.027	3.8	9.7	3.6	1	20	1480	1499	1480	1502	0.94
16	16	0.032	4.4	9.5	3.9	1	23	1508	1531	1508	1531	0.96

Sequence Information

Coding Sequence: ATGGCTACTCTGAAAGTAGTAACATGGAACACAAATGGGTTGATTAAACACAAATATGACATACAAACCTTATTAGAAAACGAAAATATTGACGTACTTCTTGTATCGGAGGCACACTTAACAccaaatcacaacacaacaatAAGAAATTACAGCATATACTCGACATTCCACCCAGACGGAACTGCTCATGCAGGCACAGCtgtaattatcaaaaaacacaTCAAGCACGAGATTCTCCAGGAATATAAAACAGACCCGATACAAGCTACCACAGTAATGGTGCAAGATAAACAAGGATCTATAAAATTATCAGCAGTGTATTGCCCCCCAAGGCACAGCATTAAGGAAGAAGAATTTACAAACTTCTTTAAAACCCTTGGACACAGATTCATATGTGGAGGCGACTGGAACGCCAAAAACGTTTGCTGGGGATCCCGACTAACTCTACCTAGAGGCCGTGAAATGAAAAGAAgtgtagataaaaataaattatatgtactGAGTACAGGCGAACCCTCATATTGGCCTACAGACCCACATAAGACACCTGACCTTCTAGATTTCTTCGTGTATAAAGGATTGTCAAACCGTTATTTAGGAGTGGAGACCTGTTTAGACAGCAGTTCAGACCACACACCAGTGATAGCCACAATAAGTACCACCTTAATTGAAAGACCAGTTAAAGAGCGACTTTACACTAATAAAACTGATTGGGATGCGTTCAGAGAATACGTAGATGAAAATCTGAACCTTAAAGtgtcacttaaaacaaaagatgaCATCGAAAAATATGCCGTAAGTTTGACAAACCTTATACAAACAGCTGCGTGGAGATGTACACCGGTTACCACACAAAAACGAGGTAGTAAGAACGTACCCAAGGATATAAAAACAAAGATTCTGGAAAAGAGACGACTAAGAAGAGTGTGGCATAACAGTCGACATTCCGAAGATAAAAGAGCATTTAATAAAGCAGCCGCTGACCTCAAACAATACCTTAAAGATATTGAAGAAGAAACTTTGCAAAACAAATTAGCTAACCTTAATCCGCAAGCTAAAAATGAGTACTCACTCTGGAAcacggttaaaaataatagggCGGCCCCTCAGGTAGCACAACATCCTGTCAAAATGAACGACAACACTTGGGCTAGAACGGACAAAGAAAGGGCTGAGGCGTTCGGACAGTTCCTGTATGAAGCCTTTACTCCAAATGGCGGCGATGCAGAAACTGAAAAAGAAATACAAGAATACTTGGAAACCGATCTACAACTATCTCTCCCAATTCAAAGCTGCTCACCTAGAGAAGTCCAAAGAGAAATAAAAGGCCTAGAGTTAAACAAGGCTCCTGGTTTCTGCCTGATAACAGCTGAAATTCTGCGAGAACTTCCTAGAAAAGCTGTAATCGGTATAACACAACTTTTTAATAGCATACTTAGGAATGGGTATGTTCCATTGATATGGAAAATATCAGAGATCATCATGATTCCAAAGCCTGGCAAACCCCCACATCTCGTATCGTCCTACAGGCCAATTAGTTTACTACCAACCATATCGAAACTATTTGAGAAGATCATCCTACGAAGGCTAACACGAATTCTTACCGAAAATGATCTCATCCCTCAACACCAGTTTGGTTTCAGAATTGGCCATTCCACTATAGAACAAGTTCACCGTGTCGCCAGTAAAATAAGAGAAGCTCTCGAGAAAAAGCAGTACTGCTCTGCTGTTTTTCTCGACGTACAACAAGCatttgataaagtttggcacCTGGGAttgcttttcaaaataaagaacCAACTCCCATACAACTTCTACCTGCTCCTTAAGTCGTACTTGGAAGACCGTATATTTAGAGTTAAAATCAATGACACCTACTCTGCCTTTCAAGACATAAAAGCCGGTGTGCCACAAGGTTCCATTTTGGGCCCTGTTCTGTATCTTTTGTACACTGCAGATATACCTACAACGGATAATGTTCTATCTGCCACCTTCGCAGACGACACCGCTGCACTTAGCAACCATGAAAATCCCAATACAGCGTCCTTAACTCTACAAAGTCACCTCAACAAAATAAGCAAATGGATGGAAAAGTGGCGTATCAAGGCCAGCTCAAGCAAGTCAGTGCATGTCACTTTTACCCTAAGAAAAGACAACTGCCCCCCAATCAAACTAGGAAACGATGTTCTTCCTCACCAAGATTCAGCAAAATACTTAGGCATGCATCTTGACAGGAAACAAACTTGGAAAacccatataaaaaaaaaacgcgacgAGCTAAACATAAGGCTAAGAAACTTAAACTGGCTATTAGGCAGAAGATCAAATGTCACCATGGAAAATAAGATACTAATCTATAAAACCATAATTAAACCCATCTGGACTTATGGAATTGAGTTATGGGGATCGGCCAAAAATAGCAACGTGGAAATCCTACAACGGTTCCAGAATAAAGCACTCAAAATGATAACCAAGGCACCTCTGTTTATCAGAATCATACACGTAGAGTCATTAGACGACGTCAAATTGGAGCGAGTGAAACAAGAGAAGCAACTCAGCGATGATGAGGATGACTTTGTAGAACGATGCGGcttcgatgatgatgatgatgatgaccTTGATGACGAACCCCTGACAAAATTAGCGAGTAAAATACCCAAAAAAGAATCAGTGGACCTATTAGACCTCCTAGACAACACCAAGGCAACGGCGAAACGGAAATCCACGACGAAAACTAAGTCGGTtgcgacaaaaaaatctaaaactgTCAAAAAGGAGCCCATTAAAGCTGGCGCTAGTAAATTGGCTGGAGCTAGTAAATTGGCTGGAGCTAGTAAATTAGCCGCTGCTAAAACAGAGaagaaaaagaaagcgGAAAGCTATGACGCGACGCGCTCAAACGCCGAGACAATTATCAGAAGCACTACTGCTTACCCGTTCAGAGTGAACGATAAGTCTATACTCTGTGTCTACTGCCAAGAGTTGTTCGAAGACCCTGACGAGTTCCGGAGACACATGGACGGAGAACATGACTACTTTAGCATCAAAGtcgcgttccaccacctccCAAAAACGGAATTCATTAAAGCAGACCTTACAAACTTACGATGTCGGTTGTGCAACACCAGTTTTCCGACTTTAGAAAATGTTTTGGCGCATTTAGAGACAGAACATGGCAGAAAAACGGACCCGAATGGCAAATTTGGCGTAATGCCATACTTTCTGACAAAGGACGTTTATAACTGTGcagtttgcaaaaaaaacttccCATCTCTCTTTCATTTAAACAGACACACAATCACACATTTTCTAAGCTACGTTTGCCATGTCTGTGGGAGCAGCTACGTCGCAACAACCGGCTTACTAAGACACGTGAGATCGAAACACCAAATATACGAAGTATCCTGCAAAAGGTGCAAGAAAGTCTTCCCAACGATGGAAGCCAAAGAGAAACATAGACGAACGCAGAAATCCTGCATGCCTTACTGCTGCCCGAAATGCCAGGAAAGATTCCTGGATTACAAAACGAGGAAGAAACATATGGAGGTTGAACATGAGTTCGATCCGTTGGTCGAAGCCAGACATAATGCTAAGCTCATTCTGAGATACACAACCGCTTATCCATTCAGGATACCCGCTCACGAAATGGTGTGTGTGTACTGCTGCGACGCTTTCGAAGACCCGGCGGCTTACAGAGACCACATGAAAAAAGACCACTACCAACCAAACGTCAAACATGCTTTCTCACACGCCGTGGGAATAGAGGAATACCTTAAAGTTGATTGCACAGATCTAGGATGCAAAATCTGCGCTAAAAAGTTCGAATCCGTAACTTCCATATCGGAACATCTCGTCTTAGAACATGACAAGCTATTGAATCTTAACGCAGAGATCGGGCTGCAAATATTTAAGTTAGGGGCCGAAAGATGGGTTTGTGCGACTTGCTCCCAAAAGTTCCCGTCTCTCCGATGTTTATCGAGGCATAATAACGGGCACTACCACAAGTATACATGCGAGACTTGTGGTAAATCATACATCAGTCGAGACAACTTGAAAAGGCACATTCTCTTCAGTCATACCGaggaaaagttttgtatgaagTGTCGAAAGTCCTTTCCTAATATCAAAGAGCGCCGTGCTCATGTCTTGGAAAGCAAAAGGTGCTGGCCATTCTGCTGTACTGTTTGTGGGCATAGATTTGTGTCGAGAAAACTGAGACAGGAGCACATGGCCGAAGCCCATAACGTAGAAAATAAGACTAAACTCTACAAATGCCCCGAATGCCAGGAGTCTTTCACGGAGTATGGTCATTACAGATCACACTTCATTATCACTCATACGGACGATAACTACGTCTGCCAATTCTGCGGAATAAAGTTCGCGAGTAAAAGCCGTTTGGAAGGTCACAAACTCCTGCATACCAGAGAAAAACTCTTCCATTGCACTTCTTGTACTAAATCGTTTCTTAGAAAGAAGAATTTAACGCAACACATGTGGATTCATAGCGAGCATAAGAGGTTTCACTGTACTCCTTGTAATAGGCAGTTCAATCAGAGAGTTAGTTGGAAAACGCATATGAGGTCATACCATCCGGAGATGGTGGATTTTTGA
Protein Sequence: MATLKVVTWNTNGLIKHKYDIQTLLENENIDVLLVSEAHLTPNHNTTIRNYSIYSTFHPDGTAHAGTAVIIKKHIKHEILQEYKTDPIQATTVMVQDKQGSIKLSAVYCPPRHSIKEEEFTNFFKTLGHRFICGGDWNAKNVCWGSRLTLPRGREMKRSVDKNKLYVLSTGEPSYWPTDPHKTPDLLDFFVYKGLSNRYLGVETCLDSSSDHTPVIATISTTLIERPVKERLYTNKTDWDAFREYVDENLNLKVSLKTKDDIEKYAVSLTNLIQTAAWRCTPVTTQKRGSKNVPKDIKTKILEKRRLRRVWHNSRHSEDKRAFNKAAADLKQYLKDIEEETLQNKLANLNPQAKNEYSLWNTVKNNRAAPQVAQHPVKMNDNTWARTDKERAEAFGQFLYEAFTPNGGDAETEKEIQEYLETDLQLSLPIQSCSPREVQREIKGLELNKAPGFCLITAEILRELPRKAVIGITQLFNSILRNGYVPLIWKISEIIMIPKPGKPPHLVSSYRPISLLPTISKLFEKIILRRLTRILTENDLIPQHQFGFRIGHSTIEQVHRVASKIREALEKKQYCSAVFLDVQQAFDKVWHLGLLFKIKNQLPYNFYLLLKSYLEDRIFRVKINDTYSAFQDIKAGVPQGSILGPVLYLLYTADIPTTDNVLSATFADDTAALSNHENPNTASLTLQSHLNKISKWMEKWRIKASSSKSVHVTFTLRKDNCPPIKLGNDVLPHQDSAKYLGMHLDRKQTWKTHIKKKRDELNIRLRNLNWLLGRRSNVTMENKILIYKTIIKPIWTYGIELWGSAKNSNVEILQRFQNKALKMITKAPLFIRIIHVESLDDVKLERVKQEKQLSDDEDDFVERCGFDDDDDDDLDDEPLTKLASKIPKKESVDLLDLLDNTKATAKRKSTTKTKSVATKKSKTVKKEPIKAGASKLAGASKLAGASKLAAAKTEKKKKAESYDATRSNAETIIRSTTAYPFRVNDKSILCVYCQELFEDPDEFRRHMDGEHDYFSIKVAFHHLPKTEFIKADLTNLRCRLCNTSFPTLENVLAHLETEHGRKTDPNGKFGVMPYFLTKDVYNCAVCKKNFPSLFHLNRHTITHFLSYVCHVCGSSYVATTGLLRHVRSKHQIYEVSCKRCKKVFPTMEAKEKHRRTQKSCMPYCCPKCQERFLDYKTRKKHMEVEHEFDPLVEARHNAKLILRYTTAYPFRIPAHEMVCVYCCDAFEDPAAYRDHMKKDHYQPNVKHAFSHAVGIEEYLKVDCTDLGCKICAKKFESVTSISEHLVLEHDKLLNLNAEIGLQIFKLGAERWVCATCSQKFPSLRCLSRHNNGHYHKYTCETCGKSYISRDNLKRHILFSHTEEKFCMKCRKSFPNIKERRAHVLESKRCWPFCCTVCGHRFVSRKLRQEHMAEAHNVENKTKLYKCPECQESFTEYGHYRSHFIITHTDDNYVCQFCGIKFASKSRLEGHKLLHTREKLFHCTSCTKSFLRKKNLTQHMWIHSEHKRFHCTPCNRQFNQRVSWKTHMRSYHPEMVDF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -