Xash045408.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- -
- Assembly
- GCA_950022955.1
- Location
- OX465574.1:10114930-10143491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 25 7.1 1.2 1 23 300 322 300 322 0.98 2 13 0.4 55 6.0 0.3 1 23 329 351 329 351 0.94 3 13 0.0017 0.23 13.5 0.9 2 23 384 406 384 406 0.97 4 13 1.1e-05 0.0015 20.4 0.2 1 23 415 437 415 437 0.97 5 13 0.00026 0.037 16.0 1.3 1 23 442 464 442 464 0.98 6 13 0.0058 0.81 11.8 1.7 1 21 473 493 473 498 0.93 7 13 0.008 1.1 11.4 0.8 3 23 503 523 502 523 0.97 8 13 0.033 4.6 9.4 2.0 1 21 532 552 532 557 0.92 9 13 0.0058 0.81 11.8 1.7 1 21 582 602 582 607 0.93 10 13 0.0041 0.57 12.3 2.5 1 21 644 664 644 669 0.93 11 13 3.9e-05 0.0054 18.6 0.6 1 23 674 697 674 697 0.97 12 13 6.5e-05 0.0091 17.9 1.4 1 23 703 725 703 725 0.98 13 13 1.3e-05 0.0018 20.1 1.2 2 21 735 754 735 755 0.95
Sequence Information
- Coding Sequence
- atgtctTCATTTCTATGTTTCATTTGCCACAACACCGTGAACTCGGATACGAATGAGGAGACACGGGACAAATACAGAGAAATCGTTGGCATGAATCTCTGTCCTGACTCCCATCTATGTTATATTTGCTGTCATATGCTAAATAAACTATGgctatttaaatcaatatgCTTGAAAAGAAGTTTGGAATATCCTGTACTGTTTAGCGAAAAAGGCACAATTAACTTGCAACGCAAGGAAATGGAAACGATCATCTTATGTTCAGAAGAAAGTTGTCTACCGACTTCCTTATCACAACTGTTTGTTGATAACAGAGACCAGAGTATAAATAGCAATGATTACACTAAATTAGAAGAAAGTcataatgattttgatgattatttccATGATAACTTGAACAAGGATGCTGTAGAAATGGAAATtgtaagaattgaagagtttgGCAACTCTGATAAGCAGTTTGTGAAAAGTGATGAACAgtttatgaataataatagTCAGTTTGTGAATAATGATGAGGAGTTTGTTAATAATGATGAAGAAGAGGTGAATCATGAAGAaaatattgatgatgatgatgctcatcataatgatgatgaaaacatgTTTGATTATGAATTAAATAAAGATCCACATGATAGTAATTTGGAACCTAAAGTACAGAGTGAAGAAgtacctgaaataaattatgattattatgaaGAAGAACGAAATAGATGTTTAGATGAAATTAGAAATGAATGTGGGCAAGAAGAAACTGCTGGAGAATTTGATTCAACAAAGAAAATATCTAAAAAGAGTAAAAAGAAAGATTTCGAGAAGATTGTCCTGTCAATAGAAGAGCAGAAAGCAGAATTGGAAGCGCAGAGGAAGAGTAAGAAGTATTTGGAAGCAGAGTTTAAATGCTATAACTGCGCTTTGGGATTCTTGTTCAAAGATACATATCAAGCTCATATGATGAGGCATGAAGAgTCAAACGGCGAGCACGTGTGCACGCTCTGCTCGCTCCGCTTCGCTTCGGGCGCGGTACTCCGCTCGCACGCTCTGCAGCACGGTGCTCGCTATCGCTGCTCGCGTTGTGCGCAGCATGTCCGCGCACGCCAGACGCACCGGCACGCCGCATTCTGCCGCCAGATGCTGCCGGCGAATACTTGCCAAGAATGTCAGCGGCTATTCCAGGACGCCAGTGGCTTACAGCAGCACCTGAAGAGGTTCCACATGACTAAGACAAGCAATAGGACATATGCTTGCAGTGTGTGCGGCAAAAGTTACAACAACCAAGCAGCCGTCAGGACTCATATGATAAAACACATCCACCGCAAGTTCAGCTGCGACCAATGCCCTTCCATCTTCAGTAGCCCCTACACGCTGACCCAGCACAAGAAGAAACATTCTGCGCCAGAGCACGTCTTAGAACATTACTGCACAACTTGTGGCGTGGGGTACTCCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCGTCACACCAGCAGAGAGCCTGCGACCTGTGCCCATCAATATTCAGCAGCACCTACACGCTTACCCAGCACAAGAAGAAACATTCTGCGCCTGAGCATGTCTTAGAACATTACTGCACAACTTGTGGCGTGTTGTACTCCAGCAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCGTCACACCAGCAGAGAACCAGCACCTACACGCTTACCCAGCACAAGAAGAAACATTCTGCGCCTGAGCATGTCTTAGAACATTACTGCACAACTTGTGGCGTCGGGTACTCCAGTAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCGTCACATCAGCAGAGAGCTGGTCTAGCTGCGACCTGTGCCCATCAATATTCAGTAGGCCCTTACACGGTTACCCAGCACAAGAAGAAACATTGTGCGCCTGAGCACGTCTTAGAACATTACTGCACAACTTGTGGCGTGAGGTACTCCAGTAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCGTCACACCAGCAGAGAGTATACGACTGCCCGATCTGCAACCGATCGTGCCCGAACGAGCGATCGTTAACCTCCCACATATCCACCGTCCATTCTGCGACAAAGCCGTTCCAATGTTCGACGTGCGACGCGCGCTACAGCAGTCGCAAGTCGCTGACGCGGCATGAGCGTGCGCACATCACACCACCGCAGGTCAAACTAGCCGTGTGCCATCTCTGTGGGAGGAGTTTCAAGgGCAAGAGTAAACTCAACAGGCATTTACGAGAAGTCTGCGAAAAAGATAAGCTTGAAGAAGAATTATCGTCTTACTATGAACAACAACATGTTATATTATAA
- Protein Sequence
- MSSFLCFICHNTVNSDTNEETRDKYREIVGMNLCPDSHLCYICCHMLNKLWLFKSICLKRSLEYPVLFSEKGTINLQRKEMETIILCSEESCLPTSLSQLFVDNRDQSINSNDYTKLEESHNDFDDYFHDNLNKDAVEMEIVRIEEFGNSDKQFVKSDEQFMNNNSQFVNNDEEFVNNDEEEVNHEENIDDDDAHHNDDENMFDYELNKDPHDSNLEPKVQSEEVPEINYDYYEEERNRCLDEIRNECGQEETAGEFDSTKKISKKSKKKDFEKIVLSIEEQKAELEAQRKSKKYLEAEFKCYNCALGFLFKDTYQAHMMRHEESNGEHVCTLCSLRFASGAVLRSHALQHGARYRCSRCAQHVRARQTHRHAAFCRQMLPANTCQECQRLFQDASGLQQHLKRFHMTKTSNRTYACSVCGKSYNNQAAVRTHMIKHIHRKFSCDQCPSIFSSPYTLTQHKKKHSAPEHVLEHYCTTCGVGYSSRKSLLAHHRQSASHQQRACDLCPSIFSSTYTLTQHKKKHSAPEHVLEHYCTTCGVLYSSRKSLLAHHRQSASHQQRTSTYTLTQHKKKHSAPEHVLEHYCTTCGVGYSSRKSLLAHHRQSASHQQRAGLAATCAHQYSVGPYTVTQHKKKHCAPEHVLEHYCTTCGVRYSSRKSLLAHHRQSASHQQRVYDCPICNRSCPNERSLTSHISTVHSATKPFQCSTCDARYSSRKSLTRHERAHITPPQVKLAVCHLCGRSFKGKSKLNRHLREVCEKDKLEEELSSYYEQQHVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -