Xash043858.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- -
- Assembly
- GCA_950022955.1
- Location
- OX465573.1:3910339-3919281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.2 7.2e+02 2.5 0.3 5 17 46 58 45 59 0.72 2 11 0.027 3.8 9.7 1.8 1 23 190 213 190 213 0.91 3 11 0.005 0.69 12.0 0.2 1 23 234 256 234 256 0.98 4 11 0.081 11 8.2 0.1 2 23 263 284 262 284 0.95 5 11 0.031 4.4 9.5 0.2 2 23 290 312 289 312 0.96 6 11 4.1e-06 0.00058 21.7 1.7 1 23 318 340 318 340 0.98 7 11 0.0017 0.24 13.5 0.1 1 23 346 369 346 369 0.97 8 11 0.00057 0.079 15.0 1.0 1 23 378 400 378 400 0.98 9 11 0.00028 0.038 16.0 1.3 1 23 408 430 408 430 0.95 10 11 1.3e-05 0.0018 20.1 1.9 1 23 436 458 436 458 0.98 11 11 0.00013 0.018 17.0 1.5 1 23 464 487 464 487 0.95
Sequence Information
- Coding Sequence
- atggaCAAAATATGCAGATTTTGTTTAAAAGTATCGGTCAAGAACATGTGCAGTTTACAAGAATGCGATATACTCTTTaacattcaaagatttttaaagATAAATatttccGCTGACTATTCTTTTCCCAACAATTTATGCAAGGAATGCTTTAAAAAAGTATCTCAACTGATTAAATTCTGTTTAACACTTCAAGATAATGAAGCTGAATTacaaaaatatgcaaaaaatggcttgttacaaaattattatgaaaaaattacaaatgatGGAAAGAAAGAAATTGAACAAATATACtataaaatggaaaaatatgaaataaaagaagaagaaacaaACATAGATTTTATAGAATATGATCATCCAAAACTTGAAGAATCTTCTGATGATTTAAATGAAtcccattacagttctgaggaTGAAACAACACTATCTTCtatcaaaaaaaagaaatttaaaactGCAGAGGAGcccaaaatatttactaaatcCATGCCCATACCTGGtctagaaaattttaaaagaaaaagaaaagcgGAACCACAAGTCTTTGAATATGTTAAACAATTTGTCTGTTTAATGTGTTTGAAACAGTGTGAAAGTCAATCGGATCTTTCTAAACATTACTATGCGGAACATATCAACAATCAAACAGTAGGTAAAAAGTATACAGAACACAAATTGGGAGACAAGACTATGTATACTTGTGATATTTGTGAACAAACTTATGATTTGAAGAAGGATATCGTGAAGCATGTCATAACTCACTCTGATGAAAGACCGTTGACTTGTACAGTTTGTGCTAGGACATACAGGACTGTGCCCGACATAGTCCGGCATGCTAGAGCACACAACGGTATCAAGCTGCAGTGCCCATACAACTGTGGGTTCTCCACGGCTTACCAAGGGGCTATGAAGGAGCATACAAGCAAACACCTGGATGTGTACAAGTACACCTGTGATATATGTGGCAAGGGTTTCAATACAAAGACGTGGTTTGAGCAGCACCATAACATTCACACGGGAGCAAAGCCGTTTGTCTGCGATATTTGTGGTGTCGCCTTCCCAATGTCAAGATATCTCGGAACTCACAGAGCAACAAATCACCCGCAGTCGTCCAACCTAAAGCGGTACAGATGTGTCCATTGTGGCGAACAGTGTGACAGTGCCAACAGTCTTGCTATACATATGCAGGACCATGGTATAAAGCAagagaaagattttctgtgcgATTTCTGCGGGAAGATTCTCGCGACTGCTTATCAGTTGCAGTATCACCATAGGATGCATTTGGGAGTGAAGCCATACTCTTGCACTATATGCAAGAAGAAATTCGCGAAGAAGTACAACGTACAACTGCACATGACCATCCATACCGGAGAGAAGTCTCATGCTTGTGGTCTTTGCGGCAAGCAGTACTCGCAGCGACCCACCCTGCTCAGACATCTTAAAAGATACCACCCTGGCACCTCATCTGAAAACGCCGGGGAGGCTTAA
- Protein Sequence
- MDKICRFCLKVSVKNMCSLQECDILFNIQRFLKINISADYSFPNNLCKECFKKVSQLIKFCLTLQDNEAELQKYAKNGLLQNYYEKITNDGKKEIEQIYYKMEKYEIKEEETNIDFIEYDHPKLEESSDDLNESHYSSEDETTLSSIKKKKFKTAEEPKIFTKSMPIPGLENFKRKRKAEPQVFEYVKQFVCLMCLKQCESQSDLSKHYYAEHINNQTVGKKYTEHKLGDKTMYTCDICEQTYDLKKDIVKHVITHSDERPLTCTVCARTYRTVPDIVRHARAHNGIKLQCPYNCGFSTAYQGAMKEHTSKHLDVYKYTCDICGKGFNTKTWFEQHHNIHTGAKPFVCDICGVAFPMSRYLGTHRATNHPQSSNLKRYRCVHCGEQCDSANSLAIHMQDHGIKQEKDFLCDFCGKILATAYQLQYHHRMHLGVKPYSCTICKKKFAKKYNVQLHMTIHTGEKSHACGLCGKQYSQRPTLLRHLKRYHPGTSSENAGEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084576;
- 90% Identity
- -
- 80% Identity
- -