Xash009214.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- L
- Assembly
- GCA_950022955.1
- Location
- OX465550.1:15592185-15619411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8e-06 0.00025 22.9 1.7 1 23 87 109 87 109 0.99 2 17 0.75 1e+02 5.2 5.8 1 23 115 137 115 137 0.97 3 17 1e-05 0.0014 20.5 4.1 1 23 143 165 143 165 0.99 4 17 3.1e-05 0.0043 18.9 0.1 1 23 171 193 171 193 0.98 5 17 0.0014 0.2 13.7 0.0 2 23 209 231 208 231 0.94 6 17 7.1 1e+03 2.1 0.1 9 23 262 277 258 277 0.93 7 17 0.36 50 6.2 0.0 3 23 329 349 328 349 0.97 8 17 0.065 9 8.5 0.1 3 23 363 383 362 383 0.91 9 17 0.00065 0.091 14.8 0.3 1 23 391 414 391 414 0.95 10 17 0.041 5.7 9.1 0.0 1 23 419 442 419 442 0.92 11 17 0.016 2.3 10.4 0.1 1 23 503 527 503 528 0.94 12 17 0.00024 0.033 16.2 0.1 2 23 591 612 590 612 0.96 13 17 0.069 9.6 8.4 0.0 1 23 620 642 620 642 0.97 14 17 2.3 3.2e+02 3.6 0.8 2 23 650 671 649 672 0.94 15 17 1 1.4e+02 4.7 0.3 1 23 749 771 749 771 0.94 16 17 0.0041 0.58 12.3 0.1 1 20 779 798 779 801 0.95 17 17 0.18 25 7.1 0.3 1 23 808 830 808 830 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAGGGTAACAGCAGTCGGCTGGAGCATCTTATTGAGAAGATTCAAGcgaacaaagaaaaccacgacgTCACATCGGAGGATTTAAAAGAGGCGCTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCCTGGCCGTCGTCGACGCCGGAGCCGTCGCCGTCGCCGGCGTCCACGCCCACCTCGGCCGACGCCGCCGACGCCGAGGCCGAGCCGCCCTTCACGCTCGGCGCCACAGAGCACACCCCCTACCAGTGCCAATTCTGCGACAAAGCCTTCCCCAGGCTCTCTTATCTCAAGAAACATGAACAGACCCATTCGGATCAGATGCCGTTCAGATGCGAGTTCTGCTCGCGCCTGTTCAAGCACAAACGCTCTCGCGACCGCCACGTCAAGCTGCACACCGGAGACCGCAAGTACCGCTGTGCACACTGCGAATCTGCCTTCTCCAGGAGTGACCACTTGAAGATCCACATGAAGACGCATGACAACCAGAAGCCGTTCCAGTGTACCGTGTGCAACCGAGGGTACAACACGGCAGCTGCTCTGACGTCACACATGCAGGGACACAAGAGGGACCGTGAGGGTCGGGAGCCCGACAGACGCAGGGCTCTGCGTTGTCTGCGGTGTGGGGATGCCTTCCGACGACCAGACCTACTGCAGGCGCACATGGTAAGCGCACACGGCGTGGACACTCCCGCGATGACTCCACCGCGACGCGTTGCTTCTCAGCCGCCGCCCACGCTACTCGCCTGCATCTACTGCACTCGCGACACATTCACCAGCATGGAGCAGTTACAACTTCATGTACGGGCAGCACACTCAGCCCTACTGAACGGAGAAGGACCAGTACAAGTAGATCAGCCTGCGCCCACTGATTTAAGCCGACGGGCGCCTGAGGAAGTGCCTGCAGTCAAACGTCCTCGCTCCGGCTCTGGCACACCACAAACAAATTTATCACCAAGCACCCTACTGTGCAATCAATGTGATGCTGCGCTACCAGATTTTGAAGCATTTCGGGCTCATTTAAAAGGTCATATTGAAGAAGGAGGGGAGCTACGATCAAGTCCCGCTCCTTGCGTTCACTGTGGCACTACGTTCGCGGACGCTGCGGCCTCGGAGCGCCACCTCACAGCGCATTACCTGGCGGTCTCGTGCGAGTACACCTGCCACAGCTGCGCTCGGAGCTTCGCTGCTCCTGATGACTTGCAGAAACATTTGCTTGAGCTGCACGCGCATCATTTGTATAGATGCGCTCTTTGCAAGGAGGTTTTTGATTCGAAAGTTGCGATTCAGGTGCATTTTGCGGTGGCACATAGTGGTGAAAACAAGGTTTGGGTATGCCGTTCTTGCGGTGCGGGCGCAGGCGCTCTCCGCTCGGAGGCCGAGGGCGCGGCCCACGTACGCTCTCTTCATGCGGCCGCAGCCCCTCGCTGTGCATGTGGAGCCCTACTCGGCAGTGGGGTCGCTGCGAGGACCCCTCGACCACACCGTGCCTATCGGTGCCCCGTGCCTGCCTGTAATGATGCATTTGCTGTGCAGTACTTGCTTGAACGACATATGCAGGCTCATCATGCAATGCAACAGCAAGTTCTAAACGGTGACTTATCAAGAACAAAACGAATGGACTCAACTAATGGCGGCGAGGGTGGTGATGAAGCACGATCCCCATGCTCCCCTGGAGCAGAGGGCGGTGGTGTGACCACAGCGGTGGTGGCTGCCAGTGAGGAGCGAAGGCGGAAGAATGGCGCCGTTGCCTTGCAGTGTGCTTACTGCGGGGAGCGCACGAGGAGCAGGGCAGAACTAGAGGCGCACACACGAGCTCATTCGGGGGCCGCGGCGGCGAGGCACAAGTGTCTGATCTGTGATGAAGTGCTGCCGTCTGCGGCGGTGCTTGCTGAGCATAAGCTCACACACTGCAAAGTGGTATCCGGCGACACGTGCTCCCGCTGCCGCGCGCGGCTGGTGTCTGAGGACTCGTTCCTGGGCCACATGGCGCGGCACCACCCCGCGCTGCCGGCGCCTTGCGTCGTGTGCCGGCAGACCCTCGCCTCGGAAGCGGAGGCTAGACTTCACGCACGCTTCCATCTGCGACCCGGGGAGGATGAGCAGAGATGCGCAATATGTCTCCGCGCGCTACCGGAGGGCGAGGCGGGGTCGGGCGCCCGCGCGTGCTCCACGTGCTACCTGCGCCACGCGGCGCCGCGCCCCCCGCGCCCCGCGCCCCCCGCCGACCACGACTGTCGCCTGTGTCGCCGCGCGCTCGGCTCCCCCACGCGCCTGCAAGCGCATCTCATCGAGCACACGTTCGCAGGTATCGGCGCCTTCACCTGCTACCTGTGCTCCGCGGTGTTCACGAGCGCGGCCGGCCTGCAGCGCCACCTGCCGGAGCATGCGACCGCGCCGCGACCCTACGACTGCGCTAGGTGTGGTCTCAAGTTCTTCTTCCGAGCAGAACTTGATAATCACGCATTCGTGCATCTTGAAGAGGCTGAAATTGCTCAGCGAGCTTTTTATGAAGCGTACGCTCGCGGTGCTGCGTCAGCGTGGGCTGCGCTGGCACCGCCGGAGCCGCGAACGTCTCCGCCACAAGCGGAGGTCAAACGCGAGCCGGAGATCAAAGAGGAGCGAGGAACTGAGGAGTACATTGAGGTGTCGTCCCCGCCCCCCGCGGCCCCGGCGCCCGCAGCCCCCGCCCCGCCCTCGCCTGCACTGGTCGTGAAGCAAGAGAAGCCTGACGAGGAGTAG
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTSEDLKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTPAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPAPTDLSRRAPEEVPAVKRPRSGSGTPQTNLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGTTFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSLHAAAAPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGDLSRTKRMDSTNGGEGGDEARSPCSPGAEGGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLVSEDSFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGSGARACSTCYLRHAAPRPPRPAPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHATAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTSPPQAEVKREPEIKEERGTEEYIEVSSPPPAAPAPAAPAPPSPALVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00822228;
- 80% Identity
- -