Xash048006.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- -
- Assembly
- GCA_950022955.1
- Location
- OX465577.1:5424618-5431067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.81 1.1e+02 5.1 0.6 1 23 25 47 25 47 0.94 2 25 0.027 3.7 9.7 0.3 2 23 119 141 118 141 0.93 3 25 0.015 2.1 10.5 4.0 1 23 146 169 146 169 0.95 4 25 0.01 1.4 11.0 1.1 1 23 174 197 174 197 0.96 5 25 0.15 21 7.3 0.2 2 23 200 222 199 222 0.93 6 25 0.16 22 7.3 1.1 2 22 229 249 228 249 0.93 7 25 0.026 3.6 9.8 0.4 1 23 310 333 310 333 0.92 8 25 0.21 29 6.9 0.8 1 23 378 400 378 400 0.95 9 25 0.27 37 6.6 0.0 2 23 428 450 427 450 0.89 10 25 0.00096 0.13 14.2 0.3 2 23 471 493 470 493 0.95 11 25 0.0011 0.16 14.0 4.4 1 23 498 520 498 521 0.96 12 25 2e-05 0.0028 19.5 0.7 1 23 525 548 525 548 0.96 13 25 0.22 30 6.8 0.3 2 23 551 573 550 573 0.95 14 25 0.47 66 5.8 0.8 2 20 578 596 577 601 0.91 15 25 0.0076 1.1 11.4 2.9 2 23 646 668 645 668 0.94 16 25 7.4 1e+03 2.0 0.4 2 23 697 719 696 719 0.93 17 25 0.0017 0.23 13.5 0.0 1 20 741 760 741 761 0.95 18 25 0.0095 1.3 11.1 3.3 1 23 805 828 805 828 0.94 19 25 0.9 1.3e+02 4.9 0.0 2 23 901 924 900 924 0.94 20 25 1.8e-05 0.0026 19.7 0.1 3 23 931 952 930 952 0.94 21 25 0.0033 0.46 12.6 2.8 2 23 957 979 956 979 0.94 22 25 0.01 1.4 11.0 5.1 1 23 984 1007 984 1007 0.96 23 25 2.3e-05 0.0032 19.4 5.0 1 23 1011 1034 1011 1034 0.97 24 25 0.00026 0.037 16.0 0.3 2 23 1041 1062 1040 1062 0.96 25 25 9.4e-06 0.0013 20.6 0.6 1 23 1068 1090 1068 1090 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGACGACGGAACCTCCAAATTCTATTCAACAACACATCTATTATACCTTTTAAATGGCGCGGGAAGTACCTTTGTTTCTATTGCAGTAAAGATATAGCCGAATATACAGAGTTGAGGACTCATACCAAAGCACATGGCAACTGTTCTATAAAAGACCATTccttaaaagttttaaaaggaGGGAAGAACATGGAAATCAAAGTAGACATCTCTTGTATTTCTTGCGAAGTTTGTGCAGAAACCTTACAGTCGTTCGATGAAATCATTGCTCATTTGTTTGAGAAACATGCTCTGGAGTACGACAAAGGAGTAGAAATGGCTATCGAAGAGTATAAACTTGCTAGTCTTAGTTGTACAGCATGTGATGAAACATTCACGTACTTCGGCTACCTAGTGTCACACGTCAACAATAACCACCCCAAAAACTGCCACATTTGCGAGAACTGCAATCAGAAATTCAACAAACGAAGAGATCTCTTTTCTCACGTGAAAAACTACCATCGAGAAGGAGGATACAAATGCGAAATGTGCCCCCAAGTCTTCAATTCAATGAATATTTTAAGAAAACACAGAAACAATAGGCATTTGACTCGATGCAATATATGCAATTTGAAACTACCGTCAGCTTCTATGAGACAGAAGCATATTGACTTAGAACACCCAGACGATGGTTCTTTGCAATGCGATGCTTGCTTCAAGGAGTTCCATACGAAACGAGGCCTCAAGATGCATGCAAGGAAATGTAAAGGGGAAGAAATTTTCGGAATCGCGATTAAAGAAGAAAACTCTGCCATGGACTTAGATTTAGACCAAAATTACGAGGATCCAGTCAAAAGACCTTGCGTCAAACAACTTCGGGAAAACATAGTCACAATTATTAACATGTCCACCGCAATACCTTTTAACTTTTATAAGAATAAGTTCAACTGCTTTTACTGCTCCAAAGATTTCGGCGATTCAGATTTGATGAGGGAACACACGGTTATAGAACACCCCGTATGCGATGTTAACGAGAAATATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGAAGGCGAAATCTGCAAATATTACTCAACCACACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTTTGCTTTTATTGTGGAGATGATACGAAGACACCCGAACGTCTCAGAAAACACACGAAAGCTCACGGACCTTGTAGTGATAGGGACAGAGCTATAAGACTCATTAAATCAGCTGATGTAGAAGTCAAAATAGATGTTTCCGATGTTAGTTGCGAGATTTGTTCAGAATCTTTTCCATTTTTAGACGAAATCATCGACCATTTGATTTTCAAACACCAATTGCCTTATGTTAAAGACATAGACATATTCTTATCAGCTTATAGGTTATTAGATCTACAATGTCTCCTCTGCGATAAAAGCTTTAATTACTTGCGTAAATTAATATCCCACGTGAATATTGCTCATCCGAATAACAGCTATGAGTGCGCTAAATGCACAAAGAAGTTTAATAAAAAGAGGGATTTAGATTCGCATATAAGATTCCATCATAAGACATGCCATCCTTGTACCAAATGCGATGAGAAGTTTCCTACCAACTCAGCGTTACAAGTTCATAGATCTACTGCTCATTCTTCGACCTGCAACATTTGTTTTCAAGTGTTTGCGTCTGATGGAAAGCGGCTAGCTCATCTAAAATCGGACCATGTTGCTGAAAACCAATGTGGATTCTGCAATAAAATTCTACCAACTAAACAAGCTTTTATAAGACATGCCGCAAATTGCGAACATAAACCAAACGAAGAATCCATCATAATTGATGAAGAAGACAAAAAGATTTCTgttaaagaaataagaaaaggTTTAGCTGCCATCTTTAATATAACGACCGCactcccttttaaatttttcatgAACAGGATGCGATGTTTCTACTGCACGAAAGACTTTAATTCTTGCGATGATTtaaaggagcatactttgaacgAACATCCTCTTTGCGATATATCTTTCAAATCTATGAGGTTAAGGAACAGGTATGACGGTGTTCTAATCAAAGTTGATACTTCGGCTTTGTCTTGTAGACTGTGTCATATGTCCTTGGAAGATTTGAACGATGTGGTCGACCATTTGAGCAAAGAGCATAAGGTGAAATGCAACTTTTCCGTAGAGAGTCATCTACAGTCTTTCAAACTGATTAAAGACAACTACCCCTGCCCTATTTGTGGTGAAGTTTATAGATACTTTGGGCTCCTACTCAAGCATGTTGAACCACAAACTTCTTTTCTGAACGACAGTAACATAGAACCGAAGAAAAAGCAGAATATACTACAAATAAGACAGAACATACAGTGTGTACTAAATATGTCGACGGCGGTGCCTTTCAAATTCTTCTCCAAATACTCCTGTTTTTATTGCTCAAAGAAATTCGTTGAATTCGACGAGTTACGTCACCATACCAGTCTTGAACATCCTGTTTGTGATTTGAAATCCAAATGCATGAAGAAATGTAAAGGAGAAAGGATAGCTGTTAAAATCGATATATCTACATTAGCTTGTAAATTATGTTGCCTTCCTATGCCTAACTTAGAAGATTTGATCAACCATTTAATAACCGAACATAAAGCGAATTACGACACGACAATTTCTGGATGTTTAGAACCTTTTCGGGTTATAAAAGACAACATGCCATGTCCTATATGCCCCGATACTGTATTCAGATACTTCGGCATTTTGCTTCGTCATATGAACTCCGAACACAGCAACAATAACCGGATATGCGATTTCTGCGGTCGAAGTTTCAGAAACGCAGCAAATCTAAACGTGCATATAACCTACGCACATACCGGTTCATGCGAATGTGACATTTGCGGTGTTAAATATAAGAACCAATGGTGTTTGGCACGGCATAGAGCCAGGACCCACGATGCGAAAGACCATAAATGTCCGAAATGCCCCGAGCAGTTCCAATCACAGTATCATAAgcaaaaacatttaataaaaatgcacAATGTTGGACATAAATGTAGTTATTGCGGGAAAATGTTTACAAGAAACTCATTCATGAAAGACCATGTCAGGAGAACACATTTGAAAGAAAAGAACATTCCATGCTCGATATGTAATGAGAAATTTTTCGATAATTATCTTCTGAGGATGCATATGGTAAAGCATGAGGGGGATAGGAAATTCAGTTGTACAGTTTGTGGCAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAGAAATATGGACATGTGCAGTTGTAG
- Protein Sequence
- MRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRTHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCAETLQSFDEIIAHLFEKHALEYDKGVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNNNHPKNCHICENCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDLDLDQNYEDPVKRPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDLMREHTVIEHPVCDVNEKYLETEVTKHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPERLRKHTKAHGPCSDRDRAIRLIKSADVEVKIDVSDVSCEICSESFPFLDEIIDHLIFKHQLPYVKDIDIFLSAYRLLDLQCLLCDKSFNYLRKLISHVNIAHPNNSYECAKCTKKFNKKRDLDSHIRFHHKTCHPCTKCDEKFPTNSALQVHRSTAHSSTCNICFQVFASDGKRLAHLKSDHVAENQCGFCNKILPTKQAFIRHAANCEHKPNEESIIIDEEDKKISVKEIRKGLAAIFNITTALPFKFFMNRMRCFYCTKDFNSCDDLKEHTLNEHPLCDISFKSMRLRNRYDGVLIKVDTSALSCRLCHMSLEDLNDVVDHLSKEHKVKCNFSVESHLQSFKLIKDNYPCPICGEVYRYFGLLLKHVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKLCCLPMPNLEDLINHLITEHKANYDTTISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -