Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.6e-05 0.017 16.7 0.1 18 41 196 216 188 218 0.88

2 5 0.19 2e+02 3.7 0.2 18 41 224 244 220 246 0.85

3 5 0.024 25 6.5 0.8 16 38 250 273 240 273 0.77

4 5 0.0016 1.7 10.3 0.6 18 40 280 299 276 303 0.89

5 5 0.72 7.5e+02 1.8 1.3 18 40 308 327 300 329 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.6e-05	0.017	16.7	0.1	18	41	196	216	188	218	0.88
2	5	0.19	2e+02	3.7	0.2	18	41	224	244	220	246	0.85
3	5	0.024	25	6.5	0.8	16	38	250	273	240	273	0.77
4	5	0.0016	1.7	10.3	0.6	18	40	280	299	276	303	0.89
5	5	0.72	7.5e+02	1.8	1.3	18	40	308	327	300	329	0.82

Coding Sequence: ATGGTGAACAACGGCGGCTACCCTTACTACGAGCACTACGGCGCCGCGCCGCTGTTCCCCACCATGAGCGTCAACGTCTCCATGAACATGACCATGCATGGCTGTCCGCCCGAGCAGCTCTGCTCTCAGATGCAATGGAACCAGAATGCCTCAACGCCCTCAGTCAACGTGGTCTACCCACAAACTCAAAACGTGATCAGCTCATCCAACTACCCTTCAGCCACCTACTCCTTTACTGCAGACTTCAGAACACCTAACCAGAGCGACCCTTTGATCACTGCCTCAACCTTCAAGCCACTGCTGCAAAATCCTCAAAAACCGAACCCGAACTACTCCTTATTCCAGCAGAAACCTAACTGCTCTAACCAGAAGGGTTTAGGTCAGAGTCTGAAGAGGCCACCTCCAAAGCTGTATGCTCAGGAGACGCAGAAAGAACAGAATATGGGGAACGGGTATATTCTGAACCAGGGACAGATGCATCAGCATCCGCAAGAGTATGGGTATGCTGCGTGTGTTAATTCTTCGGGGAAAGTTCCGGTTGGAGCCCTAAGCAACTGCTCGGAAGACGACGAACAGAAGCCCAACCTCTGTCGTATCTGCGGCAAGACCTACGCCAGGCCAAGCACGCTGAAGACGCACCTCCGGACACATTCAGGAGAAAGACCGTATAGATGTGGAGATTGTAACAAGAGCTTTTCGCAAGCTGCTAATTTGACAGCACATGTTCGGACGCATACCGGTCAGAAACCGTTTAGGTGTCCAATATGTGATCGTCGATTCAGCCAAAGTTCCAGTGTCACCACACACATGAGGACACATTCTGGAGAACGACCATATCAGTGCAGATCTTGCAAAAAAGCGTTCTCAGACAGCTCAACGCTGACGAAACATTTGCGTATCCACTCCGGAGAAAAACCTTACCAGTGTAAATTGTGTTTATTGAGGTTTTCTCAATCCGGTAACCTGAATCGTCACATGAGGGTCCACGGCAACATGTCAGGTGGAATGCTCGGCTGA
Protein Sequence: MVNNGGYPYYEHYGAAPLFPTMSVNVSMNMTMHGCPPEQLCSQMQWNQNASTPSVNVVYPQTQNVISSSNYPSATYSFTADFRTPNQSDPLITASTFKPLLQNPQKPNPNYSLFQQKPNCSNQKGLGQSLKRPPPKLYAQETQKEQNMGNGYILNQGQMHQHPQEYGYAACVNSSGKVPVGALSNCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMSGGMLG

Sequence clustering based on sequence similarity using MMseqs2