Xash004562.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- -
- Assembly
- GCA_950022955.1
- Location
- OX465548.1:12676835-12677941[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-07 0.0001 23.5 0.0 17 43 1 27 1 29 0.93 2 2 6.1 3.9e+03 -0.8 0.0 27 42 86 102 86 104 0.89
Sequence Information
- Coding Sequence
- atgggTGTAAGGGAAGCATGTCGGATTTATGGCGTACCTAAAACAACTGTGCATGATCGGCTTTCGGGTAGAGTTGCCGTAAACAAGATGCCTAAAGTAGGTCCTGACCCTGTTTTAGGGCGTGAGGGtgaagaaaagttaaaaaaatgggTATTAGATATGGCAAAATTTGGGTTtcctataaataaaaaagaacttttTCAAAGCGTGTTGAAAATTATTCGTGACACTGGAATGAAAAACCCATTTAAGGATGGAATTCCAGGGGACACATGGTACCAGTCATTTTTAAGACGTCACCCTGAGATAAGTGTAAGGGAGGCAGAGGGAATTAATAATGCTAGGGCAGCTGTAACCGAGACCCGAGTACGACTATGGTTTAAAGATCTCAGAGAGTATATACAATCAATAGACGCACTGGATATATTTGAAGATCCAGATAGGATTTTCAACGGAGATGAGACAGGTTTTTCTCTGTGCCCAAAAAGTGGTAAGATTTTAGGACCTAGAGGGTACAAAAACCTctacataataaaaaagagtAACGAAAAAGATAATGTCACGGTATTAGTGGAATTCACAGCGAGTGGGAAAATATGTCCACCTTTAGTAGTATTTCCATACGTAAGACCACCCAAAGCCCTCATTGATAACATGCCTACTTCATGGGTACTTGGACGATCAGAAAGTGGTTGGATGAAAAGTGATGTATTCTATGAGTACATCTGCAATAGTTATAATACATGGCTGACTGAAAACGGTATCAAGAAACCTGTACTCCTTTTTATCGATGGGCACAAGTCACATATGACTTTATCGTCGAGTCAATTTTGTGAAGCGAATGGAATCATTTTATATGCTTTACCAGCCAATACAACTCATATGCTTCAGCCGGCTTACGTGAGCGTTTTTCAGCCGCTTAAACAAGAGTGGAAAAACACAATTCGGATCTGGCAAGCGCGTGAAGAAAATATTAACCAAACCGTCACAAAAATTAACTTCTGCAAAATTCTACATGAGACTTTATCAACTATCAACTTGGAAGAAGCTATAAAAAATGGGTTCCGAAAATGTGGATTGTATCCATTAAATGAAGATGCTGTGTAA
- Protein Sequence
- MGVREACRIYGVPKTTVHDRLSGRVAVNKMPKVGPDPVLGREGEEKLKKWVLDMAKFGFPINKKELFQSVLKIIRDTGMKNPFKDGIPGDTWYQSFLRRHPEISVREAEGINNARAAVTETRVRLWFKDLREYIQSIDALDIFEDPDRIFNGDETGFSLCPKSGKILGPRGYKNLYIIKKSNEKDNVTVLVEFTASGKICPPLVVFPYVRPPKALIDNMPTSWVLGRSESGWMKSDVFYEYICNSYNTWLTENGIKKPVLLFIDGHKSHMTLSSSQFCEANGIILYALPANTTHMLQPAYVSVFQPLKQEWKNTIRIWQAREENINQTVTKINFCKILHETLSTINLEEAIKNGFRKCGLYPLNEDAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00237497;
- 90% Identity
- iTF_00237497;
- 80% Identity
- -