Xash005579.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- -
- Assembly
- GCA_950022955.1
- Location
- OX465548.1:22566399-22566935[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-12 1.7e-09 38.8 0.1 2 45 16 60 15 60 0.95
Sequence Information
- Coding Sequence
- ATGCCTCGAGCTTACGTAAGAAAGACCGATAGAAGTTCTTACTCGAAAGAAAAGCTATTAGAAGCAGTTAGGGCCGTTAAAAGTGGCGCCTTGTCAGGTTATGAAGCCTCAAAACATTATGGGATACCAAGAGCGACTATAATTAATCGCGTTTATGAGCGTAAAGGTATGAAATCCAATACTTTGGGGAGGGCCACGGTTTTATCGCGAGATGAAGAagaaaaccttgtcaaaaatttgCATGCAATGGAGAAGTATGGCTTCGGCTTGACGAGAAAGGAATTGATGGAGACTGTGGGACTATATGTGACAGCGAAAGGTGTGGATAATCCGTTCAAAAACGGAATTCCTGGAGAGGACTGGTTCCTTTCGTTTAAAAAACGACATAATATCTCTGTGAAAAAGCCGCAGCCGGTGGAGTATGCCCGAAAAACTGCATGCAGGCCTAATGTGATATACCCCTATTTCGATTTGCTGGAAGAAACAGTCAACCAACTAGAACTTCGCGACAAACCATCACGTTTGGAATATCGATGA
- Protein Sequence
- MPRAYVRKTDRSSYSKEKLLEAVRAVKSGALSGYEASKHYGIPRATIINRVYERKGMKSNTLGRATVLSRDEEENLVKNLHAMEKYGFGLTRKELMETVGLYVTAKGVDNPFKNGIPGEDWFLSFKKRHNISVKKPQPVEYARKTACRPNVIYPYFDLLEETVNQLELRDKPSRLEYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406652;
- 90% Identity
- iTF_00373869; iTF_01091665;
- 80% Identity
- -