Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.1e-12 3.3e-09 37.9 0.0 4 39 48 84 45 88 0.90

2 4 7.3e-11 4.7e-08 34.1 0.3 2 39 100 137 99 141 0.92

3 4 3.2e-14 2.1e-11 44.9 0.0 2 45 155 199 154 199 0.96

4 4 4e-18 2.6e-15 57.4 0.1 1 43 206 249 206 251 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.1e-12	3.3e-09	37.9	0.0	4	39	48	84	45	88	0.90
2	4	7.3e-11	4.7e-08	34.1	0.3	2	39	100	137	99	141	0.92
3	4	3.2e-14	2.1e-11	44.9	0.0	2	45	155	199	154	199	0.96
4	4	4e-18	2.6e-15	57.4	0.1	1	43	206	249	206	251	0.95

Coding Sequence: atgATGTGCTTCTTACTCAGTACAAGGTATCAGAGAGAAGGGAGGAAACAACCACATCTTAGCGGTGAGGACACGAGCGACTCCTGCGGCCGGCAAGCGTCGCCCGCACCGCGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAGCGAGCTTTGGACGCTCTCAGAAACCACCAGATGAGTCTTACGAAGGCATCAGCAACGTATGGCATTCCGTCCACCACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACTCCCAAGAAGGAGGGAGCCGCCAAGTCCTGGAGCGAGGCCGACCTGCGGGGGGCGCTGCATGCGCTGCGGGCTGGCGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGCATTCCCAGCAGCACTCTGTACAAAATAGCTCGGCGGGAGGGCATCCGGCTGTCGGCGCCCTTCAACGCAGCGCCCACCACCTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCAGCCACGCAGTATGGGATACCTACAGGAACGCTGTATGGTCGGTGTAAGCGAGAAGGTATCGAACTGTCCCGCTCTAACCCCACGCCGTGGTCCGAAGACGCCATGGGTGAAGCACTCGAAGCTGTCAGGGTGGGGCAGATGTCCATCAACCAAGCTGCGATACACTACAACCTGCCGTATTCTTCACTGTACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGAGTCTCCCACAAAACCAGCAACAACCGCAGCAAGATCCGCACGAACTGGAGCAAGAGCAGCAACCTCACGAGCTGCAGCCGTACTACCCGCACCCACACCGCGACCCCGACCCGCACACCTACACCCACGTGCACGAATACAcccacacacaccacacacaccacacacaccacacacaccacacacaccacacacaccacACCCACGACCAGTACGGACAGGGGCAGTACTATCAGGGTTTTAACAGTATTGCGACCAGCTGA
Protein Sequence: MMCFLLSTRYQREGRKQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTTWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSLPQNQQQPQQDPHELEQEQQPHELQPYYPHPHRDPDPHTYTHVHEYTHTHHTHHTHHTHHTHHTHHTHDQYGQGQYYQGFNSIATS

Sequence clustering based on sequence similarity using MMseqs2