Xxan020294.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- lola
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:3778387-3787568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.2e-05 0.0015 19.4 4.7 1 21 29 49 29 50 0.97 2 12 0.049 1 10.5 1.0 1 23 58 81 58 81 0.92 3 12 0.0024 0.05 14.6 3.9 2 21 137 156 136 157 0.94 4 12 0.0064 0.13 13.3 2.9 1 23 165 188 165 188 0.94 5 12 0.25 5.1 8.3 2.3 1 21 227 248 227 249 0.95 6 12 0.1 2.1 9.5 0.5 1 20 257 276 257 278 0.94 7 12 0.0062 0.13 13.3 5.9 1 21 291 311 291 312 0.95 8 12 0.51 11 7.3 0.6 3 23 322 343 320 343 0.95 9 12 0.41 8.4 7.6 8.9 3 21 383 401 381 402 0.93 10 12 0.0018 0.037 15.0 1.1 1 23 410 433 410 433 0.96 11 12 0.00024 0.0049 17.8 1.5 1 21 482 502 482 503 0.96 12 12 0.53 11 7.2 2.9 1 22 511 532 511 534 0.89
Sequence Information
- Coding Sequence
- ATGCAAGGATTAGatttctttTCGGCATTCGAAACTGCCGTCGATATCAAGTCGAAACTGCGCATCGTGGCAGTGAATCGAAGATATCAGTGTCCGAAATGCGACAAGGACTTTAAACATCGGCACCATCTCTATTCCCACTTGAGATGGGAGTGCGGCAAACCTCCCACTTTTCAATGTCCGTTCTGTACGTTCCAATCGAAACTGAAAAGCAATTTGGCCAAACACGCCCTCGCCAAACACAACATGGCTCTGAAAAAATGGGGCAAGCGCGGTCGCGAAGAACCTTTGGAATTTCAGGAAATAAAGACGGATCGTACGGTATCCTTGCGTTTTGATTTGTTAACGACCGTTGATGCCGATCCTGTCATCGAAGGTGAAGACTTCGAGAAGCTAACTTTGAGGTCTCCGTGTCCTCGATGCTCGAAGACGTTCAAACACCACCACCATCTTCTCGCCCACTTGAAATGGGAGTGCGGAAAGGCCCCCAGGTTTCATTGTCCGTTTTGTTCGTATCGAACGAAAAAGAAGGGCAACTTGACTCGGCATGCTAACCTGATACACGGCATGATCATTAAAACagagacgctgatgacctcagttgttgagcATGATTCGACGTCGCCGACGTCGCGTTTAACGACGGATGGAATATTATTCGACCAGGCTACGAATCGATACCATTGTCCGAAGTGCGATGTTCGAACTTATCGACACATGAACCATCTGTTGTCGCACATCAAATGGGAGTGCGGTCAGGAACCGAGCTTTTCCTGTCCGTTCTGTAGTTATCGAACCAAACTGAAGGGCAATCTGTCGCAGCACACCCTTGCAGGATTGACGGATCTGCGTGATTCAATCGAAGAGAGACACGTGTGCCATCAGTGTTTCAGAACCTACAAACACAAGAATCATTTGCAAGCTCATTTGAAATGGGAATGCGGAAAGCCGCCGAGATTCGGTTGTCCCTCGTGTTCGTTCAGGGCGAAGCAGAAGAGTGTTCTTAAAAGACACGTGGAATCTTCGCACAACCTGGTTCTGAAGAGGTGGGATAAAGGGAAGAAATCGAATCGCAATccgtctaattttaaaatcttgctTACAGGAACGACGGATCTACGCGACGCGACCGAAGAAAGACACTTGTGCCATCTGTGTTTCAGGACGTACAAGCACAAACATCATTTGCACGCCCATTTAAAGTGGGAATGCGGAAAGCCGCCTAGATTCGCTTGTCCGTCGTGTCCGTTCAAGGGCAAGCAGAAGAGCCACCTGAAAAGACACGCCAAAGTCGCACACAACATGGAACTCAAAAAGCATGATCTGAGTTCTCCCTTTAGCAAACTTGATGTAAGCAAAAATTCTCCTCTCAACATAgACGCTTATTACACTTTCGCCGATCGGTACCGCTGTGCGGGCGGCGCGTCGACGCCGCCGCTTCGCTACGTTTGCCCAAAGTGCGAGAGATCGTACAAGCACGGATATCATCTGCAGGCGCACATCAAATACGAATGCGGCCAGGAACCGAGGTTTCACTGTCCGAGTTGTTCTTTCCGGGCGAAACGCAAGAGTCACGTCAAGAGACACGCGGCTGCCCTTCACGGAATTGCGCTCAGCGTGACCGACATACAGTCGGTCTAA
- Protein Sequence
- MQGLDFFSAFETAVDIKSKLRIVAVNRRYQCPKCDKDFKHRHHLYSHLRWECGKPPTFQCPFCTFQSKLKSNLAKHALAKHNMALKKWGKRGREEPLEFQEIKTDRTVSLRFDLLTTVDADPVIEGEDFEKLTLRSPCPRCSKTFKHHHHLLAHLKWECGKAPRFHCPFCSYRTKKKGNLTRHANLIHGMIIKTETLMTSVVEHDSTSPTSRLTTDGILFDQATNRYHCPKCDVRTYRHMNHLLSHIKWECGQEPSFSCPFCSYRTKLKGNLSQHTLAGLTDLRDSIEERHVCHQCFRTYKHKNHLQAHLKWECGKPPRFGCPSCSFRAKQKSVLKRHVESSHNLVLKRWDKGKKSNRNPSNFKILLTGTTDLRDATEERHLCHLCFRTYKHKHHLHAHLKWECGKPPRFACPSCPFKGKQKSHLKRHAKVAHNMELKKHDLSSPFSKLDVSKNSPLNIDAYYTFADRYRCAGGASTPPLRYVCPKCERSYKHGYHLQAHIKYECGQEPRFHCPSCSFRAKRKSHVKRHAAALHGIALSVTDIQSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -